View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8595_low_11 (Length: 305)
Name: NF8595_low_11
Description: NF8595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8595_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 292
Target Start/End: Original strand, 9329365 - 9329649
Alignment:
| Q |
11 |
acatcaaatcaaaataacataacataacaaaccaaattcaaccactttttccagcatcttttcatttgaatatgtaattaagaattatgagttcattgct |
110 |
Q |
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| T |
9329365 |
acatcaaatcaaaataacataacataacaaaccaaattcaaccacttttcccagcatcttttcatttgaatatgtaattaagaattatgagttcaatgct |
9329464 |
T |
|
| Q |
111 |
aaacatgttgtctggataaaa---tgtttgcttgattcatagaaggctagtagtattatggactccaacacggattataaaacttcaatttctgatttct |
207 |
Q |
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| T |
9329465 |
aaacatgttgtctggataaaaaaatgtttgcttgattcatagaaggctagtagtattatggactccaacacggattataaaacttcaatttctgatttct |
9329564 |
T |
|
| Q |
208 |
cagttaatctagctgcatcacttagtctaagacatgaaagttgaaacataacttctcttaatacctttggaacaaccacctctga |
292 |
Q |
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| T |
9329565 |
cagttaatctagctgcatcacttagtctaagacatgaaagttgaaacataacttctcttaatacctttggaacaaccacctctga |
9329649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 9335171 - 9335286
Alignment:
| Q |
11 |
acatcaaatcaaaataacataacataacaaaccaaattcaaccactttttccagcatcttttcatttgaatatgtaattaagaattatgagttcattgct |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| |
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| T |
9335171 |
acatcaaatcaaaataacataacataacaaaccaaattcaaccactttttccagcatcttttcatctgaatatgtaattaagaattagaaattcattgct |
9335270 |
T |
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| Q |
111 |
aaacatgttgtctgga |
126 |
Q |
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| T |
9335271 |
aaacatgttgtctgga |
9335286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 9336120 - 9336184
Alignment:
| Q |
123 |
tggataaaatgtttgcttgattcatagaaggctagtagtattatggactccaacacggattataaaac |
190 |
Q |
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| T |
9336120 |
tggataaaatgtttgcttgattcatagaaggc---tagcattatggactacaacacggagtatcaaac |
9336184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 9339917 - 9339949
Alignment:
| Q |
11 |
acatcaaatcaaaataacataacataacaaacc |
43 |
Q |
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| T |
9339917 |
acatcaaatcaaaataacatagcataacaaacc |
9339949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 231059 - 231111
Alignment:
| Q |
38 |
caaaccaaattcaaccactttttccagcatcttttcatttgaatatgtaatta |
90 |
Q |
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| T |
231059 |
caaaccaaattccacctcgttttccagcatcttttcatatgaatgtgtaatta |
231111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 252113 - 252067
Alignment:
| Q |
44 |
aaattcaaccactttttccagcatcttttcatttgaatatgtaatta |
90 |
Q |
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| T |
252113 |
aaattccacctcattttccagcatcttttcatatgaatatgtaatta |
252067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 8814898 - 8814852
Alignment:
| Q |
57 |
ttttccagcatcttttcatttgaatatgtaattaagaattatgagtt |
103 |
Q |
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| T |
8814898 |
ttttccagcatcttttcatatgaatatgtaattaggacttaagagtt |
8814852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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