View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8595_low_12 (Length: 248)
Name: NF8595_low_12
Description: NF8595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8595_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 24720633 - 24720856
Alignment:
| Q |
10 |
cagcacagacaacaatatcgtgaaagataaaatgtcggctcttgtttccggtctgtccgcctgtcaggaaaaaattggaacgggatatctgtctgcattt |
109 |
Q |
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| T |
24720633 |
cagcacaaacaacaatatcgtgaaggataaaatgtcggctcttgtttccggtctgtccgcctgtcaggaaaaaattggaacgggatatctgtctgcattt |
24720732 |
T |
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| Q |
110 |
ccaaccgagttttttgatcgaattgaaaatcttgaatatgcatgggctccatattacaccattcacaaggtataagtaaaactagattttgattatgcaa |
209 |
Q |
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| T |
24720733 |
ccaaccgagttttttgatcgaattgaaaatcttgaatatgcatgggctccatattacaccattcacaaggtataagtaaaactagattttgattatgcaa |
24720832 |
T |
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| Q |
210 |
gtacttttggccttaatgatgtcc |
233 |
Q |
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|||||||||||||||||| ||||| |
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| T |
24720833 |
gtacttttggccttaatgttgtcc |
24720856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 38 - 227
Target Start/End: Original strand, 24729334 - 24729523
Alignment:
| Q |
38 |
aaaatgtcggctcttgtttccggtctgtccgcctgtcaggaaaaaattggaacgggatatctgtctgcatttccaaccgagttttttgatcgaattgaaa |
137 |
Q |
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| T |
24729334 |
aaaatgtcggctcttgtttccggtttgtccgcctgtcaggaaaaaattggaacgggatatctgtctgcttttccaaccgagctttttgatcgagtagaag |
24729433 |
T |
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| Q |
138 |
atcttgaatatgcatgggctccatattacaccattcacaaggtataagtaaaactagattttgattatgcaagtacttttggccttaatg |
227 |
Q |
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| T |
24729434 |
ctcttcaatatgcatgggctccttattataccattcacaaggtataagcaaaactatgttttcattatgcaagtatttttggccttaatg |
24729523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 24689754 - 24689940
Alignment:
| Q |
38 |
aaaatgtcggctcttgtttccggtctgtccgcctgtcaggaaaaaattggaacgggatatctgtctgcatttccaaccgagttttttgatcgaattgaaa |
137 |
Q |
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|||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| | |||||||||||||| |||||| |
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| T |
24689754 |
aaaatgtcggctcttgttgccggtctatccgcctgtcaagaaaaaattggaacaggatatctctctgcatttccgccagagttttttgatcggtttgaaa |
24689853 |
T |
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| Q |
138 |
atcttgaatatgcatgggctccatattacaccattcacaaggtataagtaaaactagattttgattatgcaagtacttttggcctta |
224 |
Q |
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| T |
24689854 |
atattcaacctgtttgggctccctattacaccattcacaaggtataaccaaaactggattttgattatgcaagtgcttttggcctta |
24689940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 38 - 192
Target Start/End: Original strand, 24746901 - 24747055
Alignment:
| Q |
38 |
aaaatgtcggctcttgtttccggtctgtccgcctgtcaggaaaaaattggaacgggatatctgtctgcatttccaaccgagttttttgatcgaattgaaa |
137 |
Q |
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||||||| |||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||| ||||||||||| |
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| T |
24746901 |
aaaatgttggctcttgttgccggtttgtctgcctgtcaggaaaaaattggaacgggatatatgtatgcgtttccaaccgaattttttaatcgaattgaag |
24747000 |
T |
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| Q |
138 |
atcttgaatatgcatgggctccatattacaccattcacaaggtataagtaaaact |
192 |
Q |
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|||| |||| ||||||||||| ||||| ||||||||||||||||||| |||||| |
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| T |
24747001 |
ctcttcaatacgcatgggctccttattataccattcacaaggtataagcaaaact |
24747055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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