View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8595_low_16 (Length: 238)
Name: NF8595_low_16
Description: NF8595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8595_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9344154 - 9344373
Alignment:
| Q |
1 |
gccctttgaaaaggcagatgtctccaaatttaattgacatgtcggggatcaccttccaattctcattgctaaatttcaacagtgctggttggggggaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9344154 |
gccctttgaaaaggcagatgtctccaaatttaattgacatgtcggggatcaccttccaattctcattgctaaatttcaacagtgctggttggggggaaaa |
9344253 |
T |
|
| Q |
101 |
ggtgaacttgccaagaacaatagggttttttccatggagcgtgagaatagcgatcttttcaggagtatatatgaagtcaaaaggagagagttcagggaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
9344254 |
ggtgaacttgccaagaacaatagggttttttccatggagcgtgagaatagcgatcttttcaggagtatatatgaagtcaaaag--gagagtttagggaag |
9344351 |
T |
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| Q |
201 |
ttgtcgtctacagtgaacatgc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
9344352 |
ttgtcgtctacagtgaacatgc |
9344373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9448623 - 9448841
Alignment:
| Q |
1 |
gccctttgaaaaggcagatgtctccaaatttaattgacatgtcggggatcaccttccaattctcattgctaaatttcaacagtgctggttggggggaaaa |
100 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||| || || |||| |||||| |||||||||||| ||| |
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| T |
9448623 |
gccctttgaaaaagcagatgtctccgaatttaattgacatgtcggggatcaccttccaagtcttatcgccgcatttgaacagtcctggttggggggcaaa |
9448722 |
T |
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| Q |
101 |
ggtgaacttgccaagaacaatagggttttttccatggagcgtgagaatagcgatcttttcaggagtatatatgaagtcaaaaggagagagttcagggaag |
200 |
Q |
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| T |
9448723 |
ggtcaactttccgagaacaataggtgtttttccatggcctgtgacagcaacgaccttttcagg---gtacatgaagcaaaaaggagagggttcaaggaag |
9448819 |
T |
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| Q |
201 |
ttgtcgtctacagtgaacatgc |
222 |
Q |
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| T |
9448820 |
ttgtcatctgcggtgaacatgc |
9448841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7013135 - 7013200
Alignment:
| Q |
1 |
gccctttgaaaaggcagatgtctccaaatttaattgacatgtcggggatcaccttccaattctcat |
66 |
Q |
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| T |
7013135 |
gccctttgaaaaggcagatgtctccgaatttcgttgacatgtcaggtatcaccttccatttctcat |
7013200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7030128 - 7030193
Alignment:
| Q |
1 |
gccctttgaaaaggcagatgtctccaaatttaattgacatgtcggggatcaccttccaattctcat |
66 |
Q |
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||||||| |||||||| ||||||||||| || |||||||| ||||||||||||||| ||||||| |
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| T |
7030128 |
gccctttaaaaaggcatatgtctccaaaattcgctgacatgttggggatcaccttccagttctcat |
7030193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 9171117 - 9171182
Alignment:
| Q |
1 |
gccctttgaaaaggcagatgtctccaaatttaattgacatgtcggggatcaccttccaattctcat |
66 |
Q |
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||||||| |||| ||| |||||| | ||||| ||||||||||| |||||||||||||||| ||||| |
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| T |
9171117 |
gccctttaaaaacgcatatgtcttcgaatttcattgacatgtcagggatcaccttccaatcctcat |
9171182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7047121 - 7047189
Alignment:
| Q |
1 |
gccctttgaaaaggcagatgtctccaaatttaattgacatgtcggggatcaccttccaattctcattgc |
69 |
Q |
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||||||| |||||||| |||||||| |||| || |||||||| |||||||||||||| || ||||||| |
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| T |
7047121 |
gccctttaaaaaggcatatgtctccgaattccatcgacatgtcagggatcaccttccatttttcattgc |
7047189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7026071 - 7026136
Alignment:
| Q |
1 |
gccctttgaaaaggcagatgtctccaaatttaattgacatgtcggggatcaccttccaattctcat |
66 |
Q |
| |
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||||||| || |||||||||||||| ||||| |||||||||| || ||||| ||||| ||||||| |
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| T |
7026071 |
gccctttaaagaggcagatgtctccgaatttcgttgacatgtcaggtatcacattccatttctcat |
7026136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9159311 - 9159246
Alignment:
| Q |
1 |
gccctttgaaaaggcagatgtctccaaatttaattgacatgtcggggatcaccttccaattctcat |
66 |
Q |
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||||||| |||| || |||||| | ||||| ||||||||||| |||||||||||||||| ||||| |
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| T |
9159311 |
gccctttaaaaacacatatgtcttcgaatttcattgacatgtcagggatcaccttccaatcctcat |
9159246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 12041942 - 12042007
Alignment:
| Q |
1 |
gccctttgaaaaggcagatgtctccaaatttaattgacatgtcggggatcaccttccaattctcat |
66 |
Q |
| |
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||||||| |||||||| |||||||| || || |||||||||||||||||||||||| ||||||| |
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| T |
12041942 |
gccctttaaaaaggcatatgtctccgaaattcgctgacatgtcggggatcaccttccagttctcat |
12042007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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