View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8595_low_18 (Length: 221)
Name: NF8595_low_18
Description: NF8595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8595_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 29524807 - 29524591
Alignment:
| Q |
4 |
aagctcgtgtagatttttatatgaccatatcgtgtggatggtaagaactgctttacaaacaacatggtagtaaagataaccaaggaaagcacccaataca |
103 |
Q |
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| T |
29524807 |
aagcccgtgtagggttttatatgaccatatcgtgtggatgttgagaacggctttacaaacaacatggtagtaaagataaccaaggaaaacaccccataca |
29524708 |
T |
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| Q |
104 |
aaaagaactttagaatgttccattttccaattaaacgattgaaagaaaggctctgagcataacataataggcctactacacttgacacaaggccaactag |
203 |
Q |
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| T |
29524707 |
gaaagaacttgagagtgttccattttccaatgaaacgattgaaagaatggctctgagcattacataataggcctactacacttgacacaattccaactat |
29524608 |
T |
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| Q |
204 |
tcttcacaatgcgttgg |
220 |
Q |
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| T |
29524607 |
tctccacattacgttgg |
29524591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 29612564 - 29612381
Alignment:
| Q |
36 |
tgtggatggtaagaactgctttacaaacaacatggtagtaaagataaccaaggaaagcacccaatacaaaaagaactttagaatgttccattttccaatt |
135 |
Q |
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| T |
29612564 |
tgtggatggtgagaactgctttacaaacaatatggtggtaaagatagccaaggaaaacactccatacagagagaacttgacaatgttccatcttccaatt |
29612465 |
T |
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| Q |
136 |
aaacgattgaaagaaaggctctgagcataacataataggcctactacacttgacacaaggccaactagtcttcacaatgcgttg |
219 |
Q |
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| T |
29612464 |
aaacgattgaaagaagggctctgagcataacacaataggccaaatacacttgacacaaggccaactagtctccaaaatgcgttg |
29612381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 29528996 - 29529070
Alignment:
| Q |
128 |
ttccaattaaacgattgaaagaaaggctctgagcataacataataggcctactacacttgacacaaggccaacta |
202 |
Q |
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| T |
29528996 |
ttccaattaatcgattgaaagaagggctcagagcataacataacaggccaactacacttgacataagcccaacta |
29529070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 29475317 - 29475394
Alignment:
| Q |
125 |
attttccaattaaacgattgaaagaaaggctctgagcataacataataggcctactacacttgacacaaggccaacta |
202 |
Q |
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||||||||||||| |||||||||||| ||||| |||||||||| | || || |||| |||||||| ||||||||||| |
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| T |
29475317 |
attttccaattaatcgattgaaagaagggctcagagcataacaaaccagaccgactatacttgacataaggccaacta |
29475394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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