View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8595_low_2 (Length: 665)

Name: NF8595_low_2
Description: NF8595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8595_low_2
NF8595_low_2
[»] chr1 (3 HSPs)
chr1 (299-657)||(3278971-3279325)
chr1 (88-280)||(3278723-3278916)
chr1 (481-652)||(3273933-3274104)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 299 - 657
Target Start/End: Original strand, 3278971 - 3279325
Alignment:
Q  299 atattattgaccgaattgactttttttgaaagaacnnnnnnnnngttgttgttgtaatgtttaaatactttttctatgaacaaatgaaattataagaatg 398  Q
    |||||||||||| | ||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3278971 atattattgaccaatttgactttttttgaaagaacttttttt---ttgttgttgtaatgtttaaatactttttctatgaacaaatgaaattataagaatg 3279067  T
Q  399 ctcattaaataataaattaaacttttatagtttgcatgaattttacaaataagtaggacaaatatatcactttaccactttctatttgaatgtcgtgaat 498  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3279068 ctcattaa-taataaattaaacttttatagtttgcatgaattttacaaataagtaggacaaatatatcactttaccactttctatttgaatgtcgtgaat 3279166  T
Q  499 attgactccaattgttcttgttaaatcaatcccatcagtgttgtgacnnnnnnnnggtgaattaatatgaatatgtgagatagttacatcttgactatcg 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| |||||||||||||    
T  3279167 attgactccaattgttcttgttaaatcaatcccatcagtgttgtgacttttttttggtgaattaatatgaatatgtgagatagttatatcttgactatcg 3279266  T
Q  599 gtcaccgcgatatgtgctcctggaccattgatatgggtgagtccatttatttgatgtcc 657  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3279267 atcaccgcgatatgtgctcctggaccattgatatgggtgagtccatttatttgaagtcc 3279325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 88 - 280
Target Start/End: Original strand, 3278723 - 3278916
Alignment:
Q  88 attggaatggtagatcaatttagaaacaagaaagttaaccatatatcnnnnnnnnnnnnnnnnngtgatcaatttagggaccgaattatctcaaccggtg 187  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||| |||||||||||||    
T  3278723 attggaatgttagatcaatttagaaacaagaaagttaaccatatatcttttttaacatttttt-gtgatcaatttagggaccgaatgatctcaaccggtg 3278821  T
Q  188 actaaatgagttagtggtaaatttgaaaaacatgg--ttttattttttgttacataaatatatggttaaatcaccggttgttaatattattgacc 280  Q
    |||||||||||||||||||||||||||||||||||  |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  3278822 actaaatgagttagtggtaaatttgaaaaacatggtttttttttttttgttaaataaatatatggttcaatcaccggttgttaatattattgacc 3278916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 481 - 652
Target Start/End: Original strand, 3273933 - 3274104
Alignment:
Q  481 tatttgaatgtcgtgaatattgactccaattgttcttgttaaatcaatcccatcagtgttgtgacnnnnnnnnggtgaattaatatgaatatgtgagata 580  Q
    |||| ||||||| |||| |||||| |  ||||  ||||||||||| || ||||| ||||||||||        |||||||||||||||||||| ||||||    
T  3273933 tattggaatgtcatgaacattgacccggattgcccttgttaaatcgattccatcggtgttgtgactttcttttggtgaattaatatgaatatgggagata 3274032  T
Q  581 gttacatcttgactatcggtcaccgcgatatgtgctcctggaccattgatatgggtgagtccatttatttga 652  Q
    ||||  ||||| ||||| |||||||| ||||||| |||||| ||||||||||| ||||||||| ||||||||    
T  3274033 gttatgtcttggctatccgtcaccgcaatatgtggtcctggtccattgatatgagtgagtccagttatttga 3274104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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