View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8595_low_3 (Length: 487)

Name: NF8595_low_3
Description: NF8595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8595_low_3
NF8595_low_3
[»] chr5 (1 HSPs)
chr5 (336-472)||(9169316-9169452)
[»] chr7 (3 HSPs)
chr7 (2-112)||(39675777-39675892)
chr7 (412-462)||(2704223-2704273)
chr7 (2-61)||(27981034-27981090)
[»] chr3 (6 HSPs)
chr3 (408-463)||(21219730-21219785)
chr3 (71-336)||(421428-421694)
chr3 (71-336)||(404383-404649)
chr3 (2-72)||(6456068-6456140)
chr3 (71-112)||(6456004-6456045)
chr3 (2-72)||(6760707-6760779)
[»] chr6 (2 HSPs)
chr6 (71-336)||(24180887-24181153)
chr6 (415-458)||(1366224-1366267)
[»] chr1 (1 HSPs)
chr1 (71-336)||(24361009-24361275)
[»] chr4 (1 HSPs)
chr4 (415-458)||(43526922-43526965)


Alignment Details
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 336 - 472
Target Start/End: Complemental strand, 9169452 - 9169316
Alignment:
Q  336 taattgacaaatatcaatggcaaaagctacggtaggcaacctctttaggggagttaacannnnnnnnnnnnnggtatgtaaaatagatattaaccattgg 435  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||             || |||||||||||||||||||||||||    
T  9169452 taattgacaaatatcaatggcaaaggctacggtgggcaacctctttaggggagttaacatttttttttttttggcatgtaaaatagatattaaccattgg 9169353  T
Q  436 aagtatttgaaattttttgaagaccatattgttactg 472  Q
    |||||||||||||||||||||||||||| ||||||||    
T  9169352 aagtatttgaaattttttgaagaccatactgttactg 9169316  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 39675892 - 39675777
Alignment:
Q  2 aagaaggagaagatgtgtgtcgaggaagaaagggatttttcgattttaagaacgaacatg--aatttgttg---aagagaacacgaatatggagctatag 96  Q
    |||||||||||||||||||||||||||||| |||||||| | |||||||||  |||||||  |||||||||   |||||||||| ||||||||||||||     
T  39675892 aagaaggagaagatgtgtgtcgaggaagaaggggattttccaattttaagagtgaacatgtaaatttgttgaaaaagagaacaccaatatggagctataa 39675793  T
Q  97 ttccggcacggtggct 112  Q
    ||||| ||||| ||||    
T  39675792 ttccgacacgggggct 39675777  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 462
Target Start/End: Original strand, 2704223 - 2704273
Alignment:
Q  412 tgtaaaatagatattaaccattggaagtatttgaaattttttgaagaccat 462  Q
    |||||||||||||||||||||||||  ||||| ||||||| ||| ||||||    
T  2704223 tgtaaaatagatattaaccattggatatatttaaaattttctgatgaccat 2704273  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 27981034 - 27981090
Alignment:
Q  2 aagaaggagaagatgtgtgtcgaggaagaaagggatttttcgattttaagaacgaacatg 61  Q
    ||||||||||| ||||||||||||||||   |||||||| | |||||||||| |||||||    
T  27981034 aagaaggagaatatgtgtgtcgaggaag---gggattttccaattttaagaatgaacatg 27981090  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 408 - 463
Target Start/End: Original strand, 21219730 - 21219785
Alignment:
Q  408 ggtatgtaaaatagatattaaccattggaagtatttgaaattttttgaagaccata 463  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21219730 ggtatgtaaaatagatattaaccattggatgtatttgaaattttttgaagaccata 21219785  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 336
Target Start/End: Original strand, 421428 - 421694
Alignment:
Q  71 aagagaacacgaatatggagctatagttccggcacggtggctagcga-gactgagtaggtgtgcttttcattttgaaacggcaacagaaggaagagaaag 169  Q
    |||||||| |||||||| ||||||||||||| | ||||||| || || ||  |||||| ||||||||||||||  |||||||  | |||||||||||||     
T  421428 aagagaactcgaatatgaagctatagttccgtcgcggtggccagagatgatggagtagatgtgcttttcatttccaaacggctgcggaaggaagagaaac 421527  T
Q  170 agacggtggaaaataagctg-ggagggaagagaaactgtagcatgcgatgactgcttat-tannnnnnnattttaaaaaatagcaattactgtagcgcgt 267  Q
     |  | |||||||||||||| ||||| ||||||||||| ||  ||||||||||| || | |        |||||||||||  | |   ||||||||||||    
T  421528 ggtggctggaaaataagctgcggaggaaagagaaactgaag--tgcgatgactgattttatcattttttattttaaaaaactgtagacactgtagcgcgt 421625  T
Q  268 gggaagtaagctttttcacacgcccgtaaattttcgtatgctaacgtccgtactaaatagcagttctgt 336  Q
    || ||  ||| ||||  || ||||||| || |||||||||| | |||||||||||||||||||| ||||    
T  421626 ggaaaaaaagattttaaacgcgcccgtgaaatttcgtatgcgaccgtccgtactaaatagcagtactgt 421694  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 336
Target Start/End: Complemental strand, 404649 - 404383
Alignment:
Q  71 aagagaacacgaatatggagctatagttccggcacggtggctagcga-gactgagtaggtgtgcttttcattttgaaacggcaacagaaggaagagaaag 169  Q
    |||||||| |||||||| ||||||||||||| | ||||||| |  || ||  |||||| ||||||||||||||  ||||||   | |||||||||||||     
T  404649 aagagaactcgaatatgaagctatagttccgtcgcggtggccatagatgatggagtagatgtgcttttcatttccaaacggttgcggaaggaagagaaac 404550  T
Q  170 agacggtggaaaataagctg-ggagggaagagaaactgtagcatgcgatgactgcttat-tannnnnnnattttaaaaaatagcaattactgtagcgcgt 267  Q
     |  | |||||||||||||| ||||| ||||||||||| |   ||||||||||| || | |        |||||||||||  |||   ||||||||||||    
T  404549 ggtggctggaaaataagctgcggaggaaagagaaactgaac--tgcgatgactgattttatcattttttattttaaaaaactgcagacactgtagcgcgt 404452  T
Q  268 gggaagtaagctttttcacacgcccgtaaattttcgtatgctaacgtccgtactaaatagcagttctgt 336  Q
    || || |||| ||||  || ||||||| || |||||||||| | |||||||||||||||||||| ||||    
T  404451 ggaaaataagattttaaacgcgcccgtgaaatttcgtatgcgaccgtccgtactaaatagcagtactgt 404383  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 6456140 - 6456068
Alignment:
Q  2 aagaaggagaagatgtgtgtcgaggaagaaagggatttttcgattttaagaacgaacatg--aatttgttgaa 72  Q
    |||||||||||||||||||||||||||||| ||||||||   |||||||||  |||||||  |||||||||||    
T  6456140 aagaaggagaagatgtgtgtcgaggaagaatgggattttctaattttaagagtgaacatgtaaatttgttgaa 6456068  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 6456045 - 6456004
Alignment:
Q  71 aagagaacacgaatatggagctatagttccggcacggtggct 112  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  6456045 aagagaacacaaatatggagctataattccggcacggtggct 6456004  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 6760707 - 6760779
Alignment:
Q  2 aagaaggagaagatgtgtgtcgaggaagaaagggatttttcgattttaagaacgaacatg--aatttgttgaa 72  Q
    |||||||||||||||||||||||| ||||| ||||||||   |||||||||  |||||||  |||||||||||    
T  6760707 aagaaggagaagatgtgtgtcgagaaagaaggggattttctaattttaagagtgaacatgtaaatttgttgaa 6760779  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 336
Target Start/End: Complemental strand, 24181153 - 24180887
Alignment:
Q  71 aagagaacacgaatatggagctatagttccggcacggtggctagcga-gactgagtaggtgtgcttttcattttgaaacggcaacagaaggaagagaaag 169  Q
    |||||||| |||||||| ||||||||||||| | ||||||| || || ||  |||||| ||||||||||||||  |||||||  | |||||||||||||     
T  24181153 aagagaactcgaatatgaagctatagttccgtcgcggtggccagagatgatggagtagatgtgcttttcatttccaaacggctgcggaaggaagagaaac 24181054  T
Q  170 agacggtggaaaataagctg-ggagggaagagaaactgtagcatgcgatgactgcttat-tannnnnnnattttaaaaaatagcaattactgtagcgcgt 267  Q
     |  | |||||||||||||| ||||| ||||||||||| ||  ||| ||||||| || | |        |||||||||||   ||   ||||||||||||    
T  24181053 ggtggctggaaaataagctgcggaggaaagagaaactgaag--tgctatgactgattttatcattttttattttaaaaaactacagacactgtagcgcgt 24180956  T
Q  268 gggaagtaagctttttcacacgcccgtaaattttcgtatgctaacgtccgtactaaatagcagttctgt 336  Q
    || || |||| ||||  || ||||||| || |||||||||| | |||||||||||||||||||| ||||    
T  24180955 ggaaaataagattttaaacgcgcccgtgaaatttcgtatgcgaccgtccgtactaaatagcagtactgt 24180887  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 458
Target Start/End: Complemental strand, 1366267 - 1366224
Alignment:
Q  415 aaaatagatattaaccattggaagtatttgaaattttttgaaga 458  Q
    ||||||||||||||||||| || |||||||||||||||| ||||    
T  1366267 aaaatagatattaaccattagatgtatttgaaattttttaaaga 1366224  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 336
Target Start/End: Original strand, 24361009 - 24361275
Alignment:
Q  71 aagagaacacgaatatggagctatagttccggcacggtggctagcga-gactgagtaggtgtgcttttcattttgaaacggcaacagaaggaagagaaag 169  Q
    |||||||| |||||||| ||||||||||||| | ||||||| || || ||  |||||| ||||||||||||||  |||||||  | |||||||||||||     
T  24361009 aagagaactcgaatatgaagctatagttccgtcgcggtggccagagatgatggagtagatgtgcttttcatttccaaacggctgcggaaggaagagaaac 24361108  T
Q  170 agacggtggaaaataagctg-ggagggaagagaaactgtagcatgcgatgactgcttat-tannnnnnnattttaaaaaatagcaattactgtagcgcgt 267  Q
     |  | |||||||||||||| ||||| ||||||||||| ||  ||| ||||||| || | |        |||||||||||  |||   ||||||||||||    
T  24361109 ggtggctggaaaataagctgcggaggaaagagaaactgaag--tgctatgactgattttatcattttttattttaaaaaactgcagacactgtagcgcgt 24361206  T
Q  268 gggaagtaagctttttcacacgcccgtaaattttcgtatgctaacgtccgtactaaatagcagttctgt 336  Q
    || || |||| ||||  || ||||||| || |||||||||| | ||||||||||| |||||||| ||||    
T  24361207 ggaaaataagattttaaacgcgcccgtgaagtttcgtatgcgaccgtccgtactatatagcagtactgt 24361275  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 458
Target Start/End: Original strand, 43526922 - 43526965
Alignment:
Q  415 aaaatagatattaaccattggaagtatttgaaattttttgaaga 458  Q
    ||||||||||||||||||| || |||||||||||||||| ||||    
T  43526922 aaaatagatattaaccattagatgtatttgaaattttttaaaga 43526965  T

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