View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8595_low_5 (Length: 467)
Name: NF8595_low_5
Description: NF8595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8595_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 13308190 - 13307758
Alignment:
| Q |
1 |
ttgtgttgcaaggagttttggtatggagttggccatggtattatgttgtgtatgatgcacatagcaaagggattagtccatctatatataggcttttgta |
100 |
Q |
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| T |
13308190 |
ttgtgttgcaaggagttttggtatggagttggccatggtattatgttgtgtatgatgcatatagcaaagggattagtccatctatatataggcttttgta |
13308091 |
T |
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| Q |
101 |
tttcgannnnnnnaaggatgttttcgaaaaataattaccaatattgatatgttacnnnnnnnaatgccaaaaaattacattgtttgaactttgcaaca-- |
198 |
Q |
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| T |
13308090 |
tttcgatttttttaaggatgttttcgaaaaataattaccaatat------------------aatgccaaaaaattacattgtttgaactttgcaacatt |
13308009 |
T |
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| Q |
199 |
-aggtaatttttaacagataaataaaggatgatatttacaatgaaatacagctaatttgagtgataaattatgagtagcatggactaagtaaacaaaatg |
297 |
Q |
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| T |
13308008 |
aaggtaatttttaacagataaataaaggatgatatttacaatgaagtacagctaatttgagtgataaattatgagtagcatggaccaagtaaacaaaatg |
13307909 |
T |
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| Q |
298 |
ttcatagattttatcaactaataaaatgaactaaaagtttaaagcacaattagttcatttagatatagacctaaggctatatgacatacattgaccaaaa |
397 |
Q |
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| T |
13307908 |
ttcatagattttatcaactaataaaatgaactaaaagtttaaagcacaattagttcatttagatatagacctaaggctatatgacatacattgaccaaaa |
13307809 |
T |
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| Q |
398 |
taggaagccaaatattacaaataggactttgtgaaaccaaggtgaaaatag |
448 |
Q |
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| T |
13307808 |
taggaagccaaatattacaaataggactttgtgaaaccaaggtgaaaatag |
13307758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 13333347 - 13333258
Alignment:
| Q |
9 |
caaggagttttggtatggagttggccatggtatta-tgttgtgtatgatgcacatagcaaagggattagtccatctatatataggctttt |
97 |
Q |
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| T |
13333347 |
caaggagctttgggtttgagttggccattgtagtagtgttgtgaatgatgcaaagagcaaaggggttaatccatctatatataggctttt |
13333258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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