View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8595_low_6 (Length: 424)
Name: NF8595_low_6
Description: NF8595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8595_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 9857695 - 9857285
Alignment:
| Q |
1 |
acctccatttcctcttcatcttcaaattcatccaaaccattgttccattgatatcctcgataatcatcttcacaataaacttcataatctaattcttcat |
100 |
Q |
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| T |
9857695 |
acctccatttcctcttcatcttcaaattcatccaaaccattgttccattgatatcctcggtaatcatcttcaaaataaacttcataatctaattcttcat |
9857596 |
T |
|
| Q |
101 |
aagtttcactttcaatagcacttgtaataggaagagccaacccattatcttcctccccaacctcaatttcctcttcatcctcttccaaacaaaggttctc |
200 |
Q |
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| T |
9857595 |
aagtttcactttcaatagcacttgtaataggaagagccaacccattatcttcctccccaacctcaatttcctctttatcctcttccaaacaaaggttctc |
9857496 |
T |
|
| Q |
201 |
ttcatctccgtaatcaccttcatcacagctatcgtcttccaaaggaattgtaagagaaaaatcaactcgaatacaaagaaactttaggttattataa--- |
297 |
Q |
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| T |
9857495 |
ttcatctccgtaatcaccttcatcacagctatcgtcttccaaaggaattgtaagagaaaaatcgactcgaatacaaagaaactttaggttattataagtc |
9857396 |
T |
|
| Q |
298 |
gtcccattaaccatatcgcgagcacatcgcaagatttcttctaccaccaacgcaaaatattctttagggaattttatgtgagaaagccacgatgaaattg |
397 |
Q |
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| T |
9857395 |
gtcccattaaccatatcgcgagcacatcgcaagatttcttctaccatcaaggcaaaatattctttagggaattttatgtgagaaagccacgatggaattg |
9857296 |
T |
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| Q |
398 |
tagtttcttcc |
408 |
Q |
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| T |
9857295 |
tagtttcttcc |
9857285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 9857884 - 9857797
Alignment:
| Q |
1 |
acctccatttcctcttcatcttcaaattcatccaaaccattgttccattgatatcctcgataatcatcttcacaataaacttcataat |
88 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||| |
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| T |
9857884 |
acctccatttcctcttcatcttcatattcttccaaaccaacgttccattgatatcctccgtaatcatcttcataattaacttcataat |
9857797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 9857753 - 9857712
Alignment:
| Q |
45 |
ccattgatatcctcgataatcatcttcacaataaacttcata |
86 |
Q |
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| T |
9857753 |
ccattgatatcctccgtaatcatcttcacaataaacttcata |
9857712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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