View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8595_low_7 (Length: 375)
Name: NF8595_low_7
Description: NF8595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8595_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 54430267 - 54429920
Alignment:
| Q |
17 |
cacttgaattaccgatgaccttccaattcgaatcaactcgctagtggaccctccaatttgagtccaagatcgattccatgcttcaatctatcgttcagtg |
116 |
Q |
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| T |
54430267 |
cacttgaattaccgatgaccttccaattcgaatcacctcgctagtggaccctccaatttgagtccaagatcgattccatgcttcaatctatcgttcagtg |
54430168 |
T |
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| Q |
117 |
gactcatatctttctcattcagattcgcattcaacactgctctgatcgctctctcactctcgtagcccaaaggtaccaactttcttcaaagcaagaatat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54430167 |
gactcatatctttctcattcagattcgcattcaacactgctctgatcgctctctcactctcgtagcccaaaggtaccaactttcttcaaagcaagaatat |
54430068 |
T |
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| Q |
217 |
gaagtttttgacactaaaattcttttatatatcaacttacttttattgtgaatgtagtcaaagttaaatcactttacattgaactcacttttttatataa |
316 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54430067 |
gaagtttttgactctaaaattcttttatatatcaacttacttttattgtgaatgtagtcaaagttaaatcactttacattgaactcacttttttatataa |
54429968 |
T |
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| Q |
317 |
cactggagcatttagcctatgtgtaatgtgtatgtagtgatgtccatc |
364 |
Q |
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| T |
54429967 |
cgctggagcatttagcctatgtgtaatgtgtatgtagtgatgtacatc |
54429920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 54425484 - 54425643
Alignment:
| Q |
44 |
tcgaatcaactcgctagtggaccctccaatttgagtccaagatcgattccatgcttcaatctatcgttcagtggactcatatctttctcattcagattcg |
143 |
Q |
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|||||||| |||||| ||||||||||||||| || || | || ||||||||||||| ||||||||||| |||||||||||||| |||| |||||||| |
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| T |
54425484 |
tcgaatcacctcgctggtggaccctccaattcgaatctcaaattgattccatgcttcgttctatcgttcaatggactcatatcttcctcacccagattcg |
54425583 |
T |
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| Q |
144 |
cattcaacactgctctgatcgctctctcactctcgtagcccaaaggtaccaactttcttc |
203 |
Q |
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|||| |||||||||||||||||||||| |||| || |||||||||| | |||||||||| |
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| T |
54425584 |
tattcgacactgctctgatcgctctctcgctcttgttgcccaaaggttcaaactttcttc |
54425643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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