View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8595_low_8 (Length: 344)

Name: NF8595_low_8
Description: NF8595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8595_low_8
NF8595_low_8
[»] chr3 (13 HSPs)
chr3 (19-190)||(37652231-37652402)
chr3 (19-195)||(37635204-37635377)
chr3 (19-195)||(37638118-37638291)
chr3 (19-195)||(37646406-37646579)
chr3 (19-195)||(37649319-37649492)
chr3 (57-190)||(37643531-37643661)
chr3 (223-327)||(37652433-37652537)
chr3 (223-323)||(37635401-37635498)
chr3 (223-323)||(37638315-37638412)
chr3 (223-323)||(37643690-37643787)
chr3 (223-323)||(37646603-37646700)
chr3 (223-323)||(37649516-37649613)
chr3 (19-61)||(37641032-37641074)
[»] chr2 (1 HSPs)
chr2 (82-142)||(5884239-5884299)
[»] chr4 (1 HSPs)
chr4 (25-135)||(32388547-32388657)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 37652231 - 37652402
Alignment:
Q  19 ctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37652231 ctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagt 37652330  T
Q  119 aaatgtaaggatcttcaccataaatggtgacgcctaagaggcatagcatcaaagctgctaacaccgctccac 190  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  37652331 aaatgtaaggatcttcaccataaacggtgacgcctaagaggcatagcatcaaagctgctaacatcgctccac 37652402  T

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Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 37635204 - 37635377
Alignment:
Q  19 ctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37635204 ctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagt 37635303  T
Q  119 aaatgtaaggatcttcaccataaatggtgacgcctaagaggcatagcatcaaagctgctaacaccgctccacaaccc 195  Q
    ||||||||||||||||||| |||| |||||||||||| ||||||||||| |||   |||||||||||||||| ||||    
T  37635304 aaatgtaaggatcttcaccgtaaacggtgacgcctaaaaggcatagcataaaa---gctaacaccgctccacgaccc 37635377  T

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Target: chr3; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 37638118 - 37638291
Alignment:
Q  19 ctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37638118 ctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagt 37638217  T
Q  119 aaatgtaaggatcttcaccataaatggtgacgcctaagaggcatagcatcaaagctgctaacaccgctccacaaccc 195  Q
    ||||||||||||||||||| |||| |||||||||||| ||||||||||| |||   |||||||||||||||| ||||    
T  37638218 aaatgtaaggatcttcaccgtaaacggtgacgcctaaaaggcatagcataaaa---gctaacaccgctccacgaccc 37638291  T

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Target: chr3; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 37646406 - 37646579
Alignment:
Q  19 ctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37646406 ctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagt 37646505  T
Q  119 aaatgtaaggatcttcaccataaatggtgacgcctaagaggcatagcatcaaagctgctaacaccgctccacaaccc 195  Q
    ||||||||||||||||||| |||| |||||||||||| ||||||||||| |||   |||||||||||||||| ||||    
T  37646506 aaatgtaaggatcttcaccgtaaacggtgacgcctaaaaggcatagcataaaa---gctaacaccgctccacgaccc 37646579  T

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Target: chr3; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 37649319 - 37649492
Alignment:
Q  19 ctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37649319 ctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagt 37649418  T
Q  119 aaatgtaaggatcttcaccataaatggtgacgcctaagaggcatagcatcaaagctgctaacaccgctccacaaccc 195  Q
    ||||||||||||||||||| |||| |||||||||||| ||||||||||| |||   |||||||||||||||| ||||    
T  37649419 aaatgtaaggatcttcaccgtaaacggtgacgcctaaaaggcatagcataaaa---gctaacaccgctccacgaccc 37649492  T

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Target: chr3; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 57 - 190
Target Start/End: Original strand, 37643531 - 37643661
Alignment:
Q  57 gataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaaggatcttcaccataaatggtgacgcctaag 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||     
T  37643531 gataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacacctaaa 37643630  T
Q  157 aggcatagcatcaaagctgctaacaccgctccac 190  Q
    ||||||||||| |||   ||||||||||||||||    
T  37643631 aggcatagcataaaa---gctaacaccgctccac 37643661  T

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Target: chr3; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 223 - 327
Target Start/End: Original strand, 37652433 - 37652537
Alignment:
Q  223 gataaaagaaataaaatgctagaaaagagagaatgagatgaaactcttatttcctatctccttcttcttattggaagaagatagttgcttttttatggaa 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  37652433 gataaaagaaataaaatgctagaaaagagagaatgagatgaaactcttatttcctatctcctccttcttattggaagaagatagttgcttttttattgaa 37652532  T
Q  323 cacat 327  Q
    |||||    
T  37652533 cacat 37652537  T

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Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 37635401 - 37635498
Alignment:
Q  223 gataaaagaaataaaatgctagaaaagagagaatgagatgaaactcttatttcctatctccttcttcttattggaagaagatagttgcttttttatggaa 322  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||||||| |||||||    
T  37635401 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctc---ctccttattggaagaagatagttgcttttctatggaa 37635497  T

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Target: chr3; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 37638315 - 37638412
Alignment:
Q  223 gataaaagaaataaaatgctagaaaagagagaatgagatgaaactcttatttcctatctccttcttcttattggaagaagatagttgcttttttatggaa 322  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||||||| |||||||    
T  37638315 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctc---ctccttattggaagaagatagttgcttttctatggaa 37638411  T

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Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 37643690 - 37643787
Alignment:
Q  223 gataaaagaaataaaatgctagaaaagagagaatgagatgaaactcttatttcctatctccttcttcttattggaagaagatagttgcttttttatggaa 322  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||||||| |||||||    
T  37643690 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctc---ctccttattggaagaagatagttgcttttctatggaa 37643786  T

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Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 37646603 - 37646700
Alignment:
Q  223 gataaaagaaataaaatgctagaaaagagagaatgagatgaaactcttatttcctatctccttcttcttattggaagaagatagttgcttttttatggaa 322  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||||||| |||||||    
T  37646603 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctc---ctccttattggaagaagatagttgcttttctatggaa 37646699  T

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Target: chr3; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 37649516 - 37649613
Alignment:
Q  223 gataaaagaaataaaatgctagaaaagagagaatgagatgaaactcttatttcctatctccttcttcttattggaagaagatagttgcttttttatggaa 322  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||||||| |||||||    
T  37649516 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctc---ctccttattggaagaagatagttgcttttctatggaa 37649612  T

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Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 37641032 - 37641074
Alignment:
Q  19 ctgttgatttcaggtcctgggaattgaccgttaataaggatac 61  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  37641032 ctgttgatttcaggtcctgggaattgaccattaataaggatac 37641074  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 5884239 - 5884299
Alignment:
Q  82 ggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaaggatcttcaccataaa 142  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||||| |||||||||||||    
T  5884239 ggtgaaatggtaccataggtaacattccatgtgaagtaaatgtaagggtcttcaccataaa 5884299  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 32388547 - 32388657
Alignment:
Q  25 atttcaggtcctgggaattgaccgttaataaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgt 124  Q
    ||||||||||| |||||||||||||| || || |||||||  || || || || |  |||| |||| |||||||||||||||||||||||||||| |  |    
T  32388547 atttcaggtcccgggaattgaccgttgatgagaatacccttttgaggagtacccaaaggtgcaatgttaccataggtaaccttccatgtatagtacacat 32388646  T
Q  125 aaggatcttca 135  Q
    |||||||||||    
T  32388647 aaggatcttca 32388657  T

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