View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8596_high_1 (Length: 385)
Name: NF8596_high_1
Description: NF8596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8596_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 32229651 - 32230005
Alignment:
| Q |
16 |
ttcttcttattgaccacaccctttattttaagatcaagacctttgttcagctcaacttcttcagggcattcactagtttcagtgtgtttaagatttgaat |
115 |
Q |
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| T |
32229651 |
ttcttcttattgaccacaccctttattttaagatcaagacctttgttcagctcaacttcttcagggcattcactagtttcagtgtgtttaaaatttgaat |
32229750 |
T |
|
| Q |
116 |
ccattgcactaccctcattcaaactaaattcatcagaatcatttgtgagaatttcagagctgttgtctttgtcctccatgctaccattcaagaccaaagc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32229751 |
ccattgcactaccctcattcaaactaaattcatcagaatcatttgtgagaatttcagagctgttgtctttgtcctccatgctaccattcaagaccaaagc |
32229850 |
T |
|
| Q |
216 |
agatgaatcaaaatcattacaaccagcaagatcaggtgatttcctaagacgtttattccttcttacagacgcgccctgggctgcattggttaattggctg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32229851 |
agatgaatcaaaatcattacaaccagcaagatcaggtgatttcctaagacgtttattccttcttacagacgcaccctgggctgcattggttaattggctg |
32229950 |
T |
|
| Q |
316 |
ccagcattctttccactgtcattgcatggaaacataaagggttggacccgtgatg |
370 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32229951 |
ccagcattctttccactgtcattacatggaaacataaagggttggacccgtgatg |
32230005 |
T |
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