View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8596_high_2 (Length: 332)
Name: NF8596_high_2
Description: NF8596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8596_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 2 - 324
Target Start/End: Complemental strand, 49824335 - 49824016
Alignment:
| Q |
2 |
caagcagtgaggtaattggcaagcggatggacaatgaaaaaacaccaaagagcaagggagttggcaagaggacaactgatagtgtgggctctgattttga |
101 |
Q |
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| T |
49824335 |
caagcagtgaggtaattggcaagcggatggacaatgaaaaaacaccgaagagcaagggagttggcaagaggacaactgatagtgtgggctctgattttga |
49824236 |
T |
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| Q |
102 |
caaacctgaagtcggcgaagggtcaattaagaaacctatgccagtgtctaagcgcattaagacttcgaaagtttaaaaatcccatgtcagttgactatgc |
201 |
Q |
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| T |
49824235 |
caaacctgaagtcggcgaagggtcaattaacaaacctatgccagtgtctaagcgcattaagacttcgaaagtttaaaaatcccatgtcagttgactatgc |
49824136 |
T |
|
| Q |
202 |
ctttgtttgtctgccttgcatctaattgagtattgttgattcagacatagtttaagaagtagtgtcaacttgtgctttttgtgtatcgtggattgaagct |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49824135 |
ctttgtttgtctgccttgcatctaattgagtattgttgattcagacatagttt---aagtagtgtcaacttgtgctttttgtgtatcgtggattgaagct |
49824039 |
T |
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| Q |
302 |
cctccttttattttcgatgatgt |
324 |
Q |
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||||||||||||||||||||||| |
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| T |
49824038 |
cctccttttattttcgatgatgt |
49824016 |
T |
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