View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8596_high_4 (Length: 316)
Name: NF8596_high_4
Description: NF8596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8596_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 43134989 - 43135274
Alignment:
| Q |
13 |
cagagacaagctccaagtctttgaaatacctcaagtaagcgacatccacataggtgacactcttgtcagcgaacaacatgatatccaccaagtagagcag |
112 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43134989 |
cagagacaagctccaagtcttcgaaatacctcaagtaagcgacatccacataggtgacactcttgttagcgaacaacatgatatccaccaagtagagcag |
43135088 |
T |
|
| Q |
113 |
atatatgtggagagatttttctcgcttctactgcatctcagctatatgatcagccttgcaggactcctttgcctcccgaagacgctccttgcaaatatcc |
212 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43135089 |
atatatgtggagagatttttctcgcttctcctgcatctcagctatatgatcagccttgcaggcctcctttgcctcccgaagacgctccttgcaaatatcc |
43135188 |
T |
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| Q |
213 |
ttcaacgagctaaatagtgcttgaacaccatttgccctttccatatgctcccatgccttgaccacaacaactccaacagctgcacc |
298 |
Q |
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| T |
43135189 |
ttcaacgagctaaatagtgcttgaacaccatttgtcctttccatatgctcccatgccttgaccacaacaactccaacagctgcacc |
43135274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 17999251 - 17999448
Alignment:
| Q |
34 |
tgaaatacctcaagtaagcgacatccacataggtgacactcttgtcagcgaacaacatgatatccaccaagtagagcagatatatgtggagagatttttc |
133 |
Q |
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|||| |||||||| |||| |||||||||||||||| |||||||||||| ||| | ||||||| ||| |||||| |||| ||||||| ||| ||| | || |
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| T |
17999251 |
tgaagtacctcaaataagtgacatccacataggtggcactcttgtcagtgaagagcatgatacccatcaagtatagcaaatatatgcggaaagactgttt |
17999350 |
T |
|
| Q |
134 |
tcgcttctactgcatctcagctatatgatcagccttgcaggactcctttgcctcccgaagacgctccttgcaaatatccttcaacgagctaaatagtgc |
232 |
Q |
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| T |
17999351 |
ccgcttctcctgcatctcagccaaatgacca-acatataggcctgctatgccttctgaagacgctccttgaaaatatcattcaaccagctaaatcgtgc |
17999448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 1347519 - 1347782
Alignment:
| Q |
13 |
cagagacaagctccaagtctttgaaatacctcaagtaagcgacatccacataggtgacactcttgtcagcgaacaacatgatatccaccaagtagagcag |
112 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| || ||||||||||||||||||||| |||||||||||| ||| | | ||||| ||||||||||||| | |
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| T |
1347519 |
cagagacaagctccaagtctctgaagtacctaaactaagcgacatccacataggtggcactcttgtcagtgaagagcgtgatacccaccaagtagagaaa |
1347618 |
T |
|
| Q |
113 |
atatatgtggagagatttttctcgcttctactgcatctcagctatatgatcagccttgcaggactcctttgcctcccgaagacgctccttgcaaatatcc |
212 |
Q |
| |
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|| |||| | ||||| | || ||||||| ||||||||| |||||| | || ||||| | || | |||| | ||||| |||||||| |||||||| |
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| T |
1347619 |
atttatgcgaagagactggtcccgcttctcttgcatctcaactatataaccatccttgtgagccttatgagccttctgaagatgctccttgaaaatatcc |
1347718 |
T |
|
| Q |
213 |
ttcaacgagctaaatagtgcttgaacaccatttgccctttccatatgctcccatgccttgacca |
276 |
Q |
| |
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|||||| | |||||| || | || ||||| || |||||||| | ||| ||||||||||||| |
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| T |
1347719 |
ttcaacaaactaaatcgttcatgggcaccaattttcctttccacctactctcatgccttgacca |
1347782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 255
Target Start/End: Complemental strand, 28769335 - 28769115
Alignment:
| Q |
34 |
tgaaatacctcaagtaagcgacatccacataggtgacactcttgtcagcgaacaacatgatatccaccaagtagagcagatatatgtggagagatttttc |
133 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||| | |||||||||| ||| | ||||||| ||| |||||| |||| ||||||| ||| ||||| || |
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| T |
28769335 |
tgaagtacctcaaataagtgacatccacataggtggcgctcttgtcagtgaagagcatgatacccatcaagtatagcaaatatatgcggaaagattgttt |
28769236 |
T |
|
| Q |
134 |
tcgcttctactgcatctcagctatatgatcagccttgcaggactcctttgcctcccgaagacgctccttgcaaatatccttcaacgagctaaatagtgct |
233 |
Q |
| |
|
||||||| |||||||||||| | |||| || | || ||| || | ||||| | |||||||||||||| ||||||| |||||| |||||||| |||| |
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| T |
28769235 |
ccgcttctcctgcatctcagccaaatgacca-acatgtaggcctattgtgccttctgaagacgctccttgaaaatatcattcaaccagctaaatcgtgca |
28769137 |
T |
|
| Q |
234 |
tgaacaccatttgccctttcca |
255 |
Q |
| |
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| ||||||||| |||||||| |
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| T |
28769136 |
taggcaccatttgtcctttcca |
28769115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 26630308 - 26630393
Alignment:
| Q |
192 |
agacgctccttgcaaatatccttcaacgagctaaatagtgcttgaacaccatttgccctttccatatgctcccatgccttgaccac |
277 |
Q |
| |
|
|||||||||||| |||| |||||||| || ||||| |||| || ||| ||||| |||||||| |||||||||||||| ||||| |
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| T |
26630308 |
agacgctccttgaaaatttccttcaagtagataaatcgtgcatgtccacaatttgtcctttccacctgctcccatgccttcaccac |
26630393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 26852854 - 26852945
Alignment:
| Q |
18 |
acaagctccaagtctttgaaatacctcaagtaagcgacatccacataggtgacactcttgtcagcgaacaacatgatatccaccaagtagag |
109 |
Q |
| |
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|||||||||| |||| |||| ||||||||||| | |||||||||||| | | ||||||| || ||||||||||||| ||||||||||||| |
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| T |
26852854 |
acaagctccaggtctctgaagtacctcaagtatgtcacatccacatagtttgcgctcttgttagtgaacaacatgatacccaccaagtagag |
26852945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 15343434 - 15343327
Alignment:
| Q |
17 |
gacaagctccaagtctttgaaatacctcaagtaagcgacatccacataggtgacactcttgtcagcgaacaacatgatatccaccaagtagagcagatat |
116 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| ||||| |||||||||||| | | ||||||| || ||| | | ||||| ||||||||||||||| |||| |
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|
| T |
15343434 |
gacaagctccaagtctctgaagtacttcaaataagcaacatccacatagtaggcgctcttgttagtgaagagcgtgatacccaccaagtagagcaaatat |
15343335 |
T |
|
| Q |
117 |
atgtggag |
124 |
Q |
| |
|
|| ||||| |
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|
| T |
15343334 |
atatggag |
15343327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 7033467 - 7033353
Alignment:
| Q |
13 |
cagagacaagctccaagtctttgaaatacctcaagtaagcgacatccacataggtgacactcttgtcagcgaacaacatgatatccaccaagtagagcag |
112 |
Q |
| |
|
|||||||||| ||||||||| |||| ||| | ||||| | |||||||| ||||||| ||||||||| || ||| | ||||| | ||||||||||||| |
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| T |
7033467 |
cagagacaagatccaagtctctgaagtactttaagtacgtgacatccatataggtggcactcttgttagtgaatagtgtgatacctaccaagtagagcaa |
7033368 |
T |
|
| Q |
113 |
atatatgtggagaga |
127 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
7033367 |
atatatgcggagaga |
7033353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 33319051 - 33319103
Alignment:
| Q |
13 |
cagagacaagctccaagtctttgaaatacctcaagtaagcgacatccacatag |
65 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| ||||| |||||||||||| |
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|
| T |
33319051 |
cagagacaagctccaagtttttgaagtacctcaaataagcaacatccacatag |
33319103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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