View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8596_low_8 (Length: 243)

Name: NF8596_low_8
Description: NF8596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8596_low_8
NF8596_low_8
[»] chr8 (6 HSPs)
chr8 (21-111)||(31713825-31713915)
chr8 (21-193)||(9277662-9277829)
chr8 (21-67)||(9277197-9277243)
chr8 (21-67)||(31713397-31713443)
chr8 (21-69)||(4402286-4402334)
chr8 (25-69)||(9929205-9929249)
[»] chr2 (2 HSPs)
chr2 (21-111)||(4879487-4879576)
chr2 (21-67)||(4879057-4879103)
[»] chr4 (7 HSPs)
chr4 (21-111)||(25725766-25725855)
chr4 (21-69)||(6056998-6057046)
chr4 (26-69)||(34452466-34452509)
chr4 (21-58)||(21527035-21527072)
chr4 (21-69)||(20143280-20143328)
chr4 (25-69)||(32137988-32138032)
chr4 (21-69)||(32138836-32138884)
[»] chr5 (2 HSPs)
chr5 (21-67)||(15561411-15561457)
chr5 (21-68)||(13541692-13541739)
[»] chr7 (2 HSPs)
chr7 (25-69)||(37783480-37783524)
chr7 (21-75)||(48110690-48110744)
[»] chr3 (3 HSPs)
chr3 (25-90)||(18745348-18745413)
chr3 (21-58)||(53343866-53343903)
chr3 (21-90)||(54308454-54308523)
[»] chr1 (1 HSPs)
chr1 (21-58)||(39682320-39682357)


Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 31713915 - 31713825
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacccgtggaccactcaatttcactgttagattaaaagcaacccacctgatctaatt 111  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31713915 gtggattctagggtgagggttctaacaagtccctcacccgtggaccactcaatttcaccgttagattaaaagcaacccacctgatctaatt 31713825  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 9277829 - 9277662
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacccgtggaccactcaatttcactgttagattaaaagcaacccacctgatctaattatccacgac 120  Q
    |||||||||||||||||||  | |  ||||||||||||  |||| || |||||||||  ||||||||||||||| || || | |||||||||||||        
T  9277829 gtggattctagggtgagggagcaattaagtccctcaccaatggatcattcaatttcatcgttagattaaaagcagcc-acattatctaattatccat--- 9277734  T
Q  121 taccacctcacctgatccaatttctttctccctg--cttagcctatctgaatcttatatccagcgtttgcactct 193  Q
       ||||||||||||||||||||||||||| ||   ||||||||||||||||||| |||||||||| ||||||||    
T  9277733 ---cacctcacctgatccaatttctttctctctctacttagcctatctgaatcttttatccagcgtctgcactct 9277662  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 9277197 - 9277243
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacccgtggacca 67  Q
    ||||||||||||||||||| |||||||||||||||| | ||||||||    
T  9277197 gtggattctagggtgagggttctaacaagtccctcatcggtggacca 9277243  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 31713397 - 31713443
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacccgtggacca 67  Q
    |||||||||||||||| || |||||||||||||||| | ||||||||    
T  31713397 gtggattctagggtgaaggttctaacaagtccctcatcggtggacca 31713443  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 4402334 - 4402286
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacccgtggaccact 69  Q
    ||||||||||||||||||| ||||  |||||||||||| ||| ||||||    
T  4402334 gtggattctagggtgagggttctattaagtccctcaccggtgaaccact 4402286  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 9929205 - 9929249
Alignment:
Q  25 attctagggtgagggctctaacaagtccctcacccgtggaccact 69  Q
    |||||| |||||||||||||  |||||||||||| ||||||||||    
T  9929205 attctaaggtgagggctctactaagtccctcaccggtggaccact 9929249  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 4879576 - 4879487
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacccgtggaccactcaatttcactgttagattaaaagcaacccacctgatctaatt 111  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||    
T  4879576 gtggattctagggtgaggt-tctaacaagtccctcacccgtggaccattcaatttcaccgttagattaaaagcaacctacctgatctaatt 4879487  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 4879057 - 4879103
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacccgtggacca 67  Q
    |||||||||||||||| || |||||||||||||||| | ||||||||    
T  4879057 gtggattctagggtgaaggttctaacaagtccctcatcggtggacca 4879103  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 25725855 - 25725766
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacccgtggaccactcaatttcactgttagattaaaagcaacccacctgatctaatt 111  Q
    ||||| |||||||||||||  | |  |||||||||||| |||||||| |||||||| | |||||||||||||||| |||||| ||||||||    
T  25725855 gtggagtctagggtgagggagcaattaagtccctcaccggtggaccattcaatttcgccgttagattaaaagcaa-ccaccttatctaatt 25725766  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 6057046 - 6056998
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacccgtggaccact 69  Q
    ||||||||||||||||||| ||||  |||||||||||| ||||||||||    
T  6057046 gtggattctagggtgagggttctactaagtccctcaccggtggaccact 6056998  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 34452466 - 34452509
Alignment:
Q  26 ttctagggtgagggctctaacaagtccctcacccgtggaccact 69  Q
    ||||||||||||||||||| |||||||||||||  |||||||||    
T  34452466 ttctagggtgagggctctagcaagtccctcaccaatggaccact 34452509  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 21527072 - 21527035
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacc 58  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  21527072 gtggattctagggtgagggctctattaagtccctcacc 21527035  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 20143280 - 20143328
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacccgtggaccact 69  Q
    |||||||||||||||||||||| |  |||||||||||| ||| ||||||    
T  20143280 gtggattctagggtgagggctcaactaagtccctcaccggtgtaccact 20143328  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 32137988 - 32138032
Alignment:
Q  25 attctagggtgagggctctaacaagtccctcacccgtggaccact 69  Q
    |||||||||||||||||||| ||||| |||| || ||||||||||    
T  32137988 attctagggtgagggctctaccaagttcctctccggtggaccact 32138032  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 32138884 - 32138836
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacccgtggaccact 69  Q
    |||||||||| ||||||||||||| ||| || |||||| ||||||||||    
T  32138884 gtggattctaaggtgagggctctatcaaatcactcaccggtggaccact 32138836  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 15561411 - 15561457
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacccgtggacca 67  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||||    
T  15561411 gtggattctagggtgagggctctactaagtccctcaccggtggacca 15561457  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 13541739 - 13541692
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacccgtggaccac 68  Q
    |||||||||||| ||||||||| ||||| ||||||||| |||||||||    
T  13541739 gtggattctaggatgagggctccaacaaatccctcaccggtggaccac 13541692  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 37783524 - 37783480
Alignment:
Q  25 attctagggtgagggctctaacaagtccctcacccgtggaccact 69  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||    
T  37783524 attctagggtgagggctctactaagtccctcaccggtggaccact 37783480  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 48110744 - 48110690
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacccgtggaccactcaattt 75  Q
    |||| ||||||||||||||||||| ||||||| |||||| || |||||| |||||    
T  48110744 gtggcttctagggtgagggctctaccaagtccatcacccatgtaccactaaattt 48110690  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 18745413 - 18745348
Alignment:
Q  25 attctagggtgagggctctaacaagtccctcacccgtggaccactcaatttcactgttagattaaa 90  Q
    ||||||||||||||| || | ||||||||||||| ||| |||||| ||||| ||  ||||||||||    
T  18745413 attctagggtgagggttcaatcaagtccctcaccggtgcaccactgaatttgaccattagattaaa 18745348  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 53343903 - 53343866
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacc 58  Q
    ||||||||||||||||||| || |||||||||||||||    
T  53343903 gtggattctagggtgagggttcaaacaagtccctcacc 53343866  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 54308454 - 54308523
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacccgtggaccactcaatttcactgttagattaaa 90  Q
    ||||||||||||||||||| || |  |||||||||||| ||| |||||| | ||| || |||||||||||    
T  54308454 gtggattctagggtgagggttcaattaagtccctcaccggtgaaccacttattttgaccgttagattaaa 54308523  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 39682320 - 39682357
Alignment:
Q  21 gtggattctagggtgagggctctaacaagtccctcacc 58  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  39682320 gtggattctagggtgagggctctatcaagtccttcacc 39682357  T

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