View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8596_low_9 (Length: 228)

Name: NF8596_low_9
Description: NF8596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8596_low_9
NF8596_low_9
[»] chr7 (4 HSPs)
chr7 (19-193)||(7631013-7631190)
chr7 (156-228)||(7631296-7631368)
chr7 (165-228)||(45100180-45100243)
chr7 (134-228)||(35589781-35589875)
[»] chr8 (4 HSPs)
chr8 (130-224)||(5981506-5981600)
chr8 (130-228)||(2954572-2954670)
chr8 (151-227)||(2954310-2954386)
chr8 (65-110)||(5981450-5981495)
[»] chr6 (2 HSPs)
chr6 (130-226)||(15092057-15092153)
chr6 (183-224)||(22605372-22605413)
[»] chr3 (3 HSPs)
chr3 (134-225)||(43481587-43481678)
chr3 (138-224)||(40195892-40195978)
chr3 (130-224)||(43978639-43978733)
[»] chr2 (2 HSPs)
chr2 (130-228)||(19548140-19548238)
chr2 (165-225)||(34217537-34217596)
[»] chr5 (1 HSPs)
chr5 (167-225)||(26420849-26420907)
[»] chr1 (3 HSPs)
chr1 (134-224)||(4392260-4392350)
chr1 (65-109)||(27686533-27686577)
chr1 (134-196)||(6182400-6182462)
[»] scaffold0039 (1 HSPs)
scaffold0039 (161-227)||(29018-29084)
[»] scaffold0135 (1 HSPs)
scaffold0135 (69-109)||(39466-39506)
[»] chr4 (3 HSPs)
chr4 (69-109)||(9233601-9233641)
chr4 (168-216)||(18648009-18648057)
chr4 (65-101)||(47680726-47680762)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 7631190 - 7631013
Alignment:
Q  19 ctcggtagggggagcgagagtgggatcctagcctggatcaggctgctgtggtgtctaagcctcttattggt--catggacgttt-agtccattgttgctt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||| ||||||||| | |||    
T  7631190 ctcggtagggggagcgagagtgggatcctagcctggatcaggctgctgtggtgtctaagcctcttattagtgtcatggacgttttagtccattgctactt 7631091  T
Q  116 cagtcgctccccggaaaccttaaggcatcaggtacatggatctcatcttttatatatccgacattttctcctttccta 193  Q
    | | |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  7631090 ccggcgctccccagaaaccttaaggcatcaggtacatgggtctcatctcttatatatccgacattttctcctttccta 7631013  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 7631296 - 7631368
Alignment:
Q  156 tctcatcttttatatatccgacattttctcctttcctagtcgatgtggaacttaaccactcacacttgaaacc 228  Q
    |||| ||| |||||||||| ||||||||||| ||   ||||||||||| ||||||| ||||||||||||||||    
T  7631296 tctcctctcttatatatccaacattttctccattttcagtcgatgtgggacttaactactcacacttgaaacc 7631368  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 45100243 - 45100180
Alignment:
Q  165 ttatatatccgacattttctcctttcctagtcgatgtggaacttaaccactcacacttgaaacc 228  Q
    |||||||| | |||||||||   ||||||||| ||||||||| ||| |||||||||||||||||    
T  45100243 ttatatattcaacattttcttaattcctagtcaatgtggaacataatcactcacacttgaaacc 45100180  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 35589781 - 35589875
Alignment:
Q  134 cttaaggcatcaggtacatggatctcatcttttatatatccgacattttctcctttcctagtcgatgtggaacttaaccactcacacttgaaacc 228  Q
    |||||||||||| | | ||| ||||| |||||||||||||| |||||||  |  |||||| | ||||||  || ||| |||||||||||||||||    
T  35589781 cttaaggcatcacgcatatgtatctcctcttttatatatccaacatttttgcaattcctaattgatgtgagacataatcactcacacttgaaacc 35589875  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 5981506 - 5981600
Alignment:
Q  130 aaaccttaaggcatcaggtacatggatctcatcttttatatatccgacattttctcctttcctagtcgatgtggaacttaaccactcacacttga 224  Q
    ||||||||||||||||||||||||| || | ||| |||||||||| || |||||||| |||||||||||||||| || ||| |||||||||||||    
T  5981506 aaaccttaaggcatcaggtacatgggtcccctctcttatatatccaacgttttctccattcctagtcgatgtgggacataatcactcacacttga 5981600  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 2954572 - 2954670
Alignment:
Q  130 aaaccttaaggcatcaggtacatggatctcatcttttatatatccgacattttctcctttcctagtcgatgtggaacttaaccactcacacttgaaacc 228  Q
    |||||||||||||||||| | |||| |||  ||| |||||||||| ||||||||||| ||||||||| |||||| || ||| |||||||||||||||||    
T  2954572 aaaccttaaggcatcaggcatatgggtcttctctcttatatatccaacattttctccattcctagtctatgtgggacataatcactcacacttgaaacc 2954670  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 2954310 - 2954386
Alignment:
Q  151 atggatctcatcttttatatatccgacattttctcctttcctagtcgatgtggaacttaaccactcacacttgaaac 227  Q
    |||| |||| ||| |||||||||| ||||||||||| |||||||||||||||| |  ||| ||||||||||||||||    
T  2954310 atgggtctcctctcttatatatccaacattttctccattcctagtcgatgtgggaaataatcactcacacttgaaac 2954386  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 5981495 - 5981450
Alignment:
Q  65 tgtggtgtctaagcctcttattggtcatggacgtttagtccattgt 110  Q
    ||||||||||||| |||||||||||  ||||||||||| |||||||    
T  5981495 tgtggtgtctaagtctcttattggttctggacgtttagcccattgt 5981450  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 15092153 - 15092057
Alignment:
Q  130 aaaccttaaggcatcaggtacatggatctcatcttttatatatccgacattttctcctttcctagtcgatgtggaacttaaccactcacacttgaaa 226  Q
    ||||||||| |||||||||| ||||||| | |||  ||||||||| ||||||||||  || ||| ||||||||| | ||||||||||||||||||||    
T  15092153 aaaccttaaagcatcaggtatatggatcccctctcgtatatatccaacattttctcaatttctaatcgatgtggtatttaaccactcacacttgaaa 15092057  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 22605372 - 22605413
Alignment:
Q  183 ctcctttcctagtcgatgtggaacttaaccactcacacttga 224  Q
    |||| ||||||||||||||||||| ||| |||||||||||||    
T  22605372 ctccattcctagtcgatgtggaacataatcactcacacttga 22605413  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 43481678 - 43481587
Alignment:
Q  134 cttaaggcatcaggtacatggatctcatcttttatatatccgacattttctcctttcctagtcgatgtggaacttaaccactcacacttgaa 225  Q
    ||||| |||||||||| |||| || | ||| |||||||||| |||||| |||| |||||||||||||||  || ||| ||||||||||||||    
T  43481678 cttaatgcatcaggtatatgggtcccctctcttatatatccaacatttcctccattcctagtcgatgtgagacataatcactcacacttgaa 43481587  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 40195892 - 40195978
Alignment:
Q  138 aggcatcaggtacatggatctcatcttttatatatccgacattttctcctttcctagtcgatgtggaacttaaccactcacacttga 224  Q
    |||||||| ||| |||| |||| ||| |||||||||| || ||| |||| ||||||||||||||| ||| ||| |||||||||||||    
T  40195892 aggcatcatgtatatgggtctcctctcttatatatccaacgtttcctccattcctagtcgatgtgaaacataatcactcacacttga 40195978  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 43978639 - 43978733
Alignment:
Q  130 aaaccttaaggcatcaggtacatggatctcatcttttatatatccgacattttctcctttcctagtcgatgtggaacttaaccactcacacttga 224  Q
    |||||||||||||  ||||| |||  |||| ||| |||||||||| |  ||| |||| |||||||||||||||| || ||| |||||||||||||    
T  43978639 aaaccttaaggcaataggtatatgagtctcctctcttatatatccaatgtttcctccattcctagtcgatgtgggacataatcactcacacttga 43978733  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 19548238 - 19548140
Alignment:
Q  130 aaaccttaaggcatcaggtacatggatctcatcttttatatatccgacattttctcctttcctagtcgatgtggaacttaaccactcacacttgaaacc 228  Q
    |||||||||| ||| || || |||| |||| ||| |||||||||| |||||| |||  || ||||||||||||| || ||||||||||| |||||||||    
T  19548238 aaaccttaagacattagatatatgggtctcctctcttatatatccaacatttcctctatttctagtcgatgtgggacataaccactcacgcttgaaacc 19548140  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 34217596 - 34217537
Alignment:
Q  165 ttatatatccgacattttctcctttcctagtcgatgtggaacttaaccactcacacttgaa 225  Q
    ||||||||||  ||||| |||| ||||||| |||||||| | |||||||||||||||||||    
T  34217596 ttatatatccaccatttcctccattcctagccgatgtggga-ttaaccactcacacttgaa 34217537  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 26420849 - 26420907
Alignment:
Q  167 atatatccgacattttctcctttcctagtcgatgtggaacttaaccactcacacttgaa 225  Q
    |||||||| |||||| |||| || ||||||||||||| ||||||| |||||||||||||    
T  26420849 atatatccaacatttcctccatttctagtcgatgtgggacttaactactcacacttgaa 26420907  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 4392260 - 4392350
Alignment:
Q  134 cttaaggcatcaggtacatggatctcatcttttatatatccgacattttctcctttcctagtcgatgtggaacttaaccactcacacttga 224  Q
    |||||||||||||||| |||| |||| ||| |||||||||| |  ||| |||| ||| |||||||||||  || ||| |||||||||||||    
T  4392260 cttaaggcatcaggtatatgggtctcctctgttatatatccaatgtttcctccattcatagtcgatgtgagacataatcactcacacttga 4392350  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 27686577 - 27686533
Alignment:
Q  65 tgtggtgtctaagcctcttattggtcatggacgtttagtccattg 109  Q
    ||||||||||||| |||||||||||| ||||| ||||||||||||    
T  27686577 tgtggtgtctaagtctcttattggtcttggacatttagtccattg 27686533  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 6182462 - 6182400
Alignment:
Q  134 cttaaggcatcaggtacatggatctcatcttttatatatccgacattttctcctttcctagtc 196  Q
    |||||||||||||||| || |||||  |||  ||||||||| ||||||||||| |||||||||    
T  6182462 cttaaggcatcaggtatatagatcttctctcatatatatccaacattttctccattcctagtc 6182400  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 29084 - 29018
Alignment:
Q  161 tcttttatatatccgacattttctcctttcctagtcgatgtggaacttaaccactcacacttgaaac 227  Q
    |||| ||||||||| ||||||| || ||| |||||||||||||||| ||| || ||||| |||||||    
T  29084 tcttatatatatccaacattttttcattttctagtcgatgtggaacataatcattcacatttgaaac 29018  T

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Target: scaffold0135 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 39466 - 39506
Alignment:
Q  69 gtgtctaagcctcttattggtcatggacgtttagtccattg 109  Q
    |||||||||||||||| ||||||| | ||||||||||||||    
T  39466 gtgtctaagcctcttaatggtcatagtcgtttagtccattg 39506  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 9233601 - 9233641
Alignment:
Q  69 gtgtctaagcctcttattggtcatggacgtttagtccattg 109  Q
    |||||||||||||||| ||||||| | ||||||||||||||    
T  9233601 gtgtctaagcctcttaatggtcatagtcgtttagtccattg 9233641  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 18648057 - 18648009
Alignment:
Q  168 tatatccgacattttctcctttcctagtcgatgtggaacttaaccactc 216  Q
    ||||||||||||||||||| || | |||||||||||||  |||||||||    
T  18648057 tatatccgacattttctccatttcaagtcgatgtggaatataaccactc 18648009  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 47680726 - 47680762
Alignment:
Q  65 tgtggtgtctaagcctcttattggtcatggacgttta 101  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  47680726 tgtggtgtctaagtctcttattggtcctggacgttta 47680762  T

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