View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8597_high_3 (Length: 297)
Name: NF8597_high_3
Description: NF8597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8597_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 279
Target Start/End: Complemental strand, 30406056 - 30405783
Alignment:
| Q |
6 |
tttggtgttgttaaaataataatgctaagtatcacgaaattttttgtgccgacaaaatcacgatgtattgaaataacagagtgacaaataaatgttggaa |
105 |
Q |
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| T |
30406056 |
tttggtattgttaaaataataatgctaagtatcacgaaattttttgtgccgacaaaatcacgatgtattgaaataacagagtgacaaataaatgttggaa |
30405957 |
T |
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| Q |
106 |
tggaagaaataaacttttgttacgaacattaaagcatacgaagccaaagttataaatgtatttattcaaaaattaaaataatttcaatttccacaaagta |
205 |
Q |
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| T |
30405956 |
tggaagaaataaacttttgttacgaacattaaagcatacgaagccaaagttataaatgtatttattcaaaaattaaaataatttcaatttccacaaagta |
30405857 |
T |
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| Q |
206 |
gagaatctgatgaatacttattaggagtgttttctccatttaaacatatattgaaattgtatcatgttctgaac |
279 |
Q |
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| T |
30405856 |
gagaatctgatgaatacttattaggagtgttttctccatttaaacatatattgaaattgtatcatgttctgaac |
30405783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 194 - 279
Target Start/End: Complemental strand, 30402782 - 30402697
Alignment:
| Q |
194 |
ttccacaaagtagagaatctgatgaatacttattaggagtgttttctccatttaaacatatattgaaattgtatcatgttctgaac |
279 |
Q |
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| T |
30402782 |
ttccacaaagtagagaatctgatgaatacttattaggagtgttttctccatttaaacatatattgaaattgtatcatgttctgaac |
30402697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 39617990 - 39618054
Alignment:
| Q |
23 |
aataatgctaagtatcacgaaattttttgtgccgacaaaatcacgatgtattgaaataacagagt |
87 |
Q |
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| T |
39617990 |
aataatgctacttatcacgaaactttttgtgccgacaaaatcacgatgtatggaaataacagagt |
39618054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 4551386 - 4551435
Alignment:
| Q |
34 |
gtatcacgaaattttttgtgccgacaaaatcacgatgtattgaaataaca |
83 |
Q |
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| T |
4551386 |
gtatcccgaaaaattttatgccgacaaaatcacgatgtattgaaataaca |
4551435 |
T |
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