View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8597_low_2 (Length: 385)
Name: NF8597_low_2
Description: NF8597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8597_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 3751760 - 3751413
Alignment:
| Q |
19 |
cagtcaacatgtttgatgaccctttgactataggaccacaattgagttccaagcttgttggaaaagctcaaggtttctatgcatctgcatcacaagatga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3751760 |
cagtcaacatgtttgatgaccctttgactataggaccacaattgagttctaagcttgttggaaaagctcaaggtttctatgcatctgcatcacaagatga |
3751661 |
T |
|
| Q |
119 |
ttttggttttctcatggctatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3751660 |
ttttggttttctcatggctatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggct |
3751561 |
T |
|
| Q |
219 |
agagagatgcctattattggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgcta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3751560 |
agagagatgcctattattggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgcta |
3751461 |
T |
|
| Q |
319 |
ttgttgagtacaatgtttatgtttttcactattgatttttagttgttg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3751460 |
ttgttgagtacaatgtttatgtttttcactattgatttttagttgttg |
3751413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 24 - 355
Target Start/End: Complemental strand, 3781128 - 3780797
Alignment:
| Q |
24 |
aacatgtttgatgaccctttgactataggaccacaattgagttccaagcttgttggaaaagctcaaggtttctatgcatctgcatcacaagatgattttg |
123 |
Q |
| |
|
|||||| |||| ||||||| ||| |||||||| || ||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||| || | | |
|
|
| T |
3781128 |
aacatgattgacaaccctttaactttaggaccagaactgagttctaagcttgttggaagagctcaaggattctatgcatctgcttcacaagaagaactag |
3781029 |
T |
|
| Q |
124 |
gttttctcatggctatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagaga |
223 |
Q |
| |
|
||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| ||| |||||| || ||| || |
|
|
| T |
3781028 |
gttttcttatgacaatgaattttgctttcattgaaggaaagtataatggtagtactcttactatcgtagggaggaatcctgccattaatttggttaggga |
3780929 |
T |
|
| Q |
224 |
gatgcctattattggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgctattgtt |
323 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||||||| |||||| |||| |
|
|
| T |
3780928 |
gatgcctgttgttggtggtagtggacttttcagatttgctagaggatatgctcaagctaatactcattggattgatttcaaaactggggatgcttgtgtt |
3780829 |
T |
|
| Q |
324 |
gagtacaatgtttatgtttttcactattgatt |
355 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |
|
|
| T |
3780828 |
gagtacaatgttcatgtttttcactattgatt |
3780797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 37 - 355
Target Start/End: Complemental strand, 3755609 - 3755291
Alignment:
| Q |
37 |
accctttgactataggaccacaattgagttccaagcttgttggaaaagctcaaggtttctatgcatctgcatcacaagatgattttggttttctcatggc |
136 |
Q |
| |
|
||||||| ||| |||||||||| |||| ||| ||| ||||||||||||||||||| |||||||||||||||| ||||||| ||| ||| || ||||| |
|
|
| T |
3755609 |
accctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaagttgatttgcttatggc |
3755510 |
T |
|
| Q |
137 |
tatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattatt |
236 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||| |||||| ||||||| ||||| |||||| ||| | || |||| | ||||||||||||| | ||| |
|
|
| T |
3755509 |
tatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctgtgatt |
3755410 |
T |
|
| Q |
237 |
ggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgctattgttgagtacaatgttt |
336 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| |||||| |||||||||||||||| ||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
3755409 |
ggtggtagtggatttttcagatttgctagaggttatgctgaagctaatactcattggtttgatatcaaatctggggatgctattgttgagtataatgttt |
3755310 |
T |
|
| Q |
337 |
atgtttttcactattgatt |
355 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
3755309 |
atgtttttcactattgatt |
3755291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 37 - 355
Target Start/End: Complemental strand, 3762721 - 3762403
Alignment:
| Q |
37 |
accctttgactataggaccacaattgagttccaagcttgttggaaaagctcaaggtttctatgcatctgcatcacaagatgattttggttttctcatggc |
136 |
Q |
| |
|
||||||||||| ||||||| || ||||||| || |||||||||| ||||||||| |||||||||||||||||||| || || | |||||||| ||| | |
|
|
| T |
3762721 |
accctttgactttaggacccgaactgagttctaaacttgttggaagagctcaaggattctatgcatctgcatcacaggaagaaataggttttcttatgac |
3762622 |
T |
|
| Q |
137 |
tatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattatt |
236 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | | ||||||||| ||| ||||||||| || || |
|
|
| T |
3762621 |
agtgaattttgctttcattgaaggaaagtataatggtagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgtt |
3762522 |
T |
|
| Q |
237 |
ggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgctattgttgagtacaatgttt |
336 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||| | ||||||||||| || |
|
|
| T |
3762521 |
ggtggcagtggacttttcagatttgctagaggatatgctcaagctactactcattgggttgatctcaaatctggggatgcatgtattgagtacaatcttc |
3762422 |
T |
|
| Q |
337 |
atgtttttcactattgatt |
355 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
3762421 |
atgtttttcattattgatt |
3762403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 37 - 355
Target Start/End: Complemental strand, 3776802 - 3776484
Alignment:
| Q |
37 |
accctttgactataggaccacaattgagttccaagcttgttggaaaagctcaaggtttctatgcatctgcatcacaagatgattttggttttctcatggc |
136 |
Q |
| |
|
||||||| ||| ||||||| |||||||||| || |||||||| | ||||||||| |||||||||||||| ||||| || || | |||||||| ||| | |
|
|
| T |
3776802 |
accctttaactttaggacccgaattgagttctaaacttgttggtagagctcaaggattctatgcatctgcttcacaggaagaaataggttttcttatgac |
3776703 |
T |
|
| Q |
137 |
tatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattatt |
236 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || | |||||||| ||| || |||||| || || |
|
|
| T |
3776702 |
aatgaattttgctttcattgaaggaaagtataatggtagtaccattactatcttggggaggaatcatgctcgtaataaggttagggaaatgcctgttgtt |
3776603 |
T |
|
| Q |
237 |
ggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgctattgttgagtacaatgttt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |||| |||| |||||| |||||||||||||||| |
|
|
| T |
3776602 |
ggtggtagtggacttttcagatttgctagaggttatgctgaagctactactcattggattgatgccaaagctggggatgcttgtgttgagtacaatgttc |
3776503 |
T |
|
| Q |
337 |
atgtttttcactattgatt |
355 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
3776502 |
acgtttttcactattgatt |
3776484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 37 - 351
Target Start/End: Complemental strand, 3767137 - 3766823
Alignment:
| Q |
37 |
accctttgactataggaccacaattgagttccaagcttgttggaaaagctcaaggtttctatgcatctgcatcacaagatgattttggttttctcatggc |
136 |
Q |
| |
|
||||||| ||| |||||||||| |||| ||| ||| ||||||||||||||||||| |||||||||||||||| ||||||| ||| ||| || ||||| |
|
|
| T |
3767137 |
accctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaagttgatttgcttatggc |
3767038 |
T |
|
| Q |
137 |
tatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattatt |
236 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||| |||||| ||||||| ||||| |||||| ||| | || |||| | ||||||||||||| | ||| |
|
|
| T |
3767037 |
tatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctgtgatt |
3766938 |
T |
|
| Q |
237 |
ggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgctattgttgagtacaatgttt |
336 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| |||||| |||||||| | ||||| ||||| ||| |||||| |||||||||||||||| |
|
|
| T |
3766937 |
ggtggtagtggagttttcagatttgctagaggttatgctgaagctaatactcattcgattgatttcaaatctgaggatgcttgtgttgagtacaatgttc |
3766838 |
T |
|
| Q |
337 |
atgtttttcactatt |
351 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3766837 |
atgtttttcactatt |
3766823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 3745942 - 3745687
Alignment:
| Q |
20 |
agtcaacatgtttgatgaccctttgactataggaccacaattgagttccaagcttgttggaaaagctcaaggtttctatgcatctgcatcacaagatgat |
119 |
Q |
| |
|
||||||||| |||| ||||||| ||| |||||||| || ||||||| ||||||||||||||||||||||| || ||||||||||||||| | ||||| |
|
|
| T |
3745942 |
agtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatgag |
3745843 |
T |
|
| Q |
120 |
tttggttttctcatggctatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggcta |
219 |
Q |
| |
|
||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| | ||||||||| || |
|
|
| T |
3745842 |
tttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatgggagtactattactatcttggggagaaattctgctcttaataaggtta |
3745743 |
T |
|
| Q |
220 |
gagagatgcctattattggtggtagtggacttttcagatttgctagaggatatgct |
275 |
Q |
| |
|
| || ||||||||| ||||||||| |||| ||| |||||||| ||||| |||||| |
|
|
| T |
3745742 |
gggaaatgcctattgttggtggtaccggacgttttagatttgcaagaggctatgct |
3745687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 97 - 353
Target Start/End: Complemental strand, 3770840 - 3770596
Alignment:
| Q |
97 |
atgcatctgcatcacaagatgattttggttttctcatggctatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggag |
196 |
Q |
| |
|
|||||||||||| ||||||| ||| ||| || ||||||||||| |||| ||| | |||||||||||||||||| |||| | ||||||| ||||| || |
|
|
| T |
3770840 |
atgcatctgcatgcaaagatgaagttgatttgctaatggctatgaattttgtttttactgaaggaaagtataatggaagtaaacttactattttgggaag |
3770741 |
T |
|
| Q |
197 |
gaattctggtattaataaggctagagagatgcctattattggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggttt |
296 |
Q |
| |
|
|||| || | || |||| | | ||||||||||||| |||||||||| ||||||||||||||| |||| |||||| ||||||||||||| |
|
|
| T |
3770740 |
gaatgttgtttttcataaagtttgagagatgcctatgattggtggtattggacttttcagatt------------tgctgaagctaatactcattggttt |
3770653 |
T |
|
| Q |
297 |
gatctcaaaactggagatgctattgttgagtacaatgtttatgtttttcactattga |
353 |
Q |
| |
|
||| ||||| |||| |||||| |||| ||||| |||||||||||||| || |||||| |
|
|
| T |
3770652 |
gatatcaaatctggggatgctgttgtcgagtataatgtttatgttttccattattga |
3770596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 137 - 342
Target Start/End: Complemental strand, 3789163 - 3788959
Alignment:
| Q |
137 |
tatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattatt |
236 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| || || |||||||| || ||| |||| || || ||||||| |||||| |||||| | ||| |
|
|
| T |
3789163 |
tatgaactttgctttgtttgaaggaaagtataatggaagcaccattactat-ttcaggaagaatgttgctaacaataaggttagagaaatgcctgtgatt |
3789065 |
T |
|
| Q |
237 |
ggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgctattgttgagtacaatgttt |
336 |
Q |
| |
|
||||| |||||| |||| || ||||||| ||||||||| |||||| |||| | | | ||||| ||| || |||||||||| ||||||||||||||| |
|
|
| T |
3789064 |
ggtggaagtggagtttttaggtttgctaagggatatgctgaagctagtacttactcttctgatcccaacacaggagatgctacaattgagtacaatgttt |
3788965 |
T |
|
| Q |
337 |
atgttt |
342 |
Q |
| |
|
|||||| |
|
|
| T |
3788964 |
atgttt |
3788959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 355
Target Start/End: Complemental strand, 3745648 - 3745613
Alignment:
| Q |
320 |
tgttgagtacaatgtttatgtttttcactattgatt |
355 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3745648 |
tgttgagtacaatgtttatgttttttactattgatt |
3745613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 3771367 - 3771304
Alignment:
| Q |
37 |
accctttgactataggaccacaattgagttccaagcttgttggaaaagctcaaggtttctatgc |
100 |
Q |
| |
|
||||||| ||| |||||||| || ||||||| ||||||||||||||| ||||||| ||| |||| |
|
|
| T |
3771367 |
accctttaactttaggaccagaactgagttctaagcttgttggaaaatctcaagggttcgatgc |
3771304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 282
Target Start/End: Complemental strand, 3851558 - 3851416
Alignment:
| Q |
140 |
gaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattattggt |
239 |
Q |
| |
|
||||||||| || ||||||||||||||||||| ||||| |||||||||| || ||||| | | |||||| ||||||| ||||| | || ||| |
|
|
| T |
3851558 |
gaactttgccttgtttgaaggaaagtataatgggagtaccattactatctctggaaggaacgtcgcgaacgataaggttagagagttgcctgtgatcggt |
3851459 |
T |
|
| Q |
240 |
ggtagtggacttttcagatttgctagaggatatgctaaagcta |
282 |
Q |
| |
|
||||| ||| ||||| ||||||||| ||||||||| |||||| |
|
|
| T |
3851458 |
ggtagcggagttttccgatttgctaagggatatgctgaagcta |
3851416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 296
Target Start/End: Original strand, 25985385 - 25985657
Alignment:
| Q |
24 |
aacatgtttgatgaccctttgactataggaccacaattgagttccaagcttgttggaaaagctcaaggtttctatgcatctgcatcacaagatgattttg |
123 |
Q |
| |
|
|||||| |||| ||||||| || ||||||| |||||||||||||| | ||||||||||| ||||| |||||||| || |||||||| ||| | | |
|
|
| T |
25985385 |
aacatgattgagaaccctttaaccttaggacctcaattgagttccaaattggttggaaaagcacaaggattctatgcctcaacatcacaaagtgaggtag |
25985484 |
T |
|
| Q |
124 |
gttttctcatggctatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagaga |
223 |
Q |
| |
|
|| ||||||||||||| |||||| | |||||||| ||||| |||||||| || || ||||| |||||||||||| ||| | | |||||| ||| || |
|
|
| T |
25985485 |
accttatcatggctatgaattttgctataattgaagggaagtacaatggtagcaccatcactattttggggaggaatcctgtttctgataaggttaggga |
25985584 |
T |
|
| Q |
224 |
gatgcctattattggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggttt |
296 |
Q |
| |
|
|||||||| |||||||||||||| |||||| |||||||||||||||||||| || || |||||||||||| |
|
|
| T |
25985585 |
aatgcctataattggtggtagtggtcttttccgatttgctagaggatatgctcaacttagaactcattggttt |
25985657 |
T |
|
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