View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8597_low_3 (Length: 347)
Name: NF8597_low_3
Description: NF8597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8597_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 30901133 - 30900818
Alignment:
| Q |
18 |
ataattgctttcccctcttacttcctatatatgttctgtaatgttacattttgttaatttaatagttagtattacatcgtcgttaactactcttctttat |
117 |
Q |
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| T |
30901133 |
ataattgctttcccctcttacttcctatatatgttctgtaatgttacattttgttaatttaatagttagtattacatcgtcgttaactactcttctttat |
30901034 |
T |
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| Q |
118 |
cccttttcagacagacccttttactgtgaggtctgatatcaacatcacaagattaaagaatattttcacctccaccatttcacgatagcactagcatcct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30901033 |
cccttttcagacagacccttttactgtgaggtctgatatcaacatcacaagattaaagaatattttcacctccaccatttcacgatagcactagcatcct |
30900934 |
T |
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| Q |
218 |
tcatcttttacaaaggaaataaaaaacaatcccattattttccgtcactctagccggttgtattggcaaaagataacgtaactaaacttgaggataaaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30900933 |
tcatcttttacaaaggaaataaaaaacaatcccattattttccgtcactctagctggttgtattggcaaaagataacgtaactaaacttgaggataaaac |
30900834 |
T |
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| Q |
318 |
ccagtctcttttgatg |
333 |
Q |
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|||||||||||||||| |
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| T |
30900833 |
ccagtctcttttgatg |
30900818 |
T |
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