View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8597_low_6 (Length: 261)
Name: NF8597_low_6
Description: NF8597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8597_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 54786630 - 54786744
Alignment:
| Q |
19 |
cagtgagcattgggatgcttgcatcttattttcaaaatgtttagtttgccaaaaatacctttggtctatgtgaaatgaaatgactactatggttggtaag |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54786630 |
cagtgagcgttgggatgcttgcatcttattttcaaaatgtttagtttgccaaaaatacctttggtctatgtgaaatgaaatgactactatggttggtaag |
54786729 |
T |
|
| Q |
119 |
tattcttatttgaac |
133 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
54786730 |
tattcttatttgaac |
54786744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 54786909 - 54786978
Alignment:
| Q |
135 |
tatttccaaagttattggtaagtgttaaccgctagcaaattatttcattgacatttcaaaataacttggt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54786909 |
tatttccaaagttattggtaagtgttaaccgctagcaaattatttcattgacatttcaaaataacttggt |
54786978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 54787128 - 54787174
Alignment:
| Q |
207 |
catttttcagagagtctccatcttcatttataattacattctctgct |
253 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
54787128 |
catttttaagagagtctccatcttcatttataattacattatctgct |
54787174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 19292943 - 19293012
Alignment:
| Q |
135 |
tatttccaaagttattggtaagtgttaaccgctagcaaattatttcattgacatttcaaaataacttggt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19292943 |
tatttccaaagttattggtaagtgttaaccgctagcaaattatttcattgacatttcaaaataacttggt |
19293012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 19293162 - 19293208
Alignment:
| Q |
207 |
catttttcagagagtctccatcttcatttataattacattctctgct |
253 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19293162 |
catttttaagagagtctccatcttcatttataattacattatctgct |
19293208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 42419434 - 42419401
Alignment:
| Q |
19 |
cagtgagcattgggatgcttgcatcttattttca |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
42419434 |
cagtgagcattgggatgcttgcatcttattttca |
42419401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University