View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8597_low_7 (Length: 251)
Name: NF8597_low_7
Description: NF8597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8597_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 48417070 - 48416940
Alignment:
| Q |
14 |
tttacatcaaagcttggagacatttcaattaagcttccaatcttcatatgttaaaaaggaatttatttgattcatgacaaaagcagttgacatttgttat |
113 |
Q |
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| T |
48417070 |
tttacatcaaagctttgagacatttcaattaagcttccaatcttcatatgttaaaaaggaatttatttgattcatgacaaaagcagttgacatttgttat |
48416971 |
T |
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| Q |
114 |
cttgattttatggtaacagggcaatatgggg |
144 |
Q |
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| T |
48416970 |
cttgattttatggtaacagggcaatatgggg |
48416940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 48416917 - 48416805
Alignment:
| Q |
139 |
atggggagtgagaaaagaggagttgatgttgtctctgcagttcaaaaggcaaccgtgatgactctagaaagcccactcatatctgcaattccacttaaat |
238 |
Q |
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| T |
48416917 |
atggggagtgagaaaagaggagttgatgttgtctctgcagttcaaaaggcaaccgtgatgactctagaaagcccactcatatctgcaattccacttaaat |
48416818 |
T |
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| Q |
239 |
ttgatgcacactc |
251 |
Q |
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| T |
48416817 |
ttgatgcacactc |
48416805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 48422117 - 48422057
Alignment:
| Q |
191 |
ccgtgatgactctagaaagcccactcatatctgcaattccacttaaatttgatgcacactc |
251 |
Q |
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| T |
48422117 |
ccgtgatgactctagagagtccacccatatctgcaaatccacttaaatttgatgcacactc |
48422057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 48410581 - 48410500
Alignment:
| Q |
150 |
gaaaagaggagttgatgttgtctctgcagttcaaaaggcaaccgtgatgactctagaaagcccactcatatctgcaattcca |
231 |
Q |
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| T |
48410581 |
gaaaagaggagttgacgttgtctccacagttcaaagggcaacaataaagacactacagagcccacacatatctgcaattcca |
48410500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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