View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8598_low_1 (Length: 447)
Name: NF8598_low_1
Description: NF8598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8598_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 2354935 - 2354508
Alignment:
| Q |
17 |
acatcatattacattgtagctaaaatgtgtgtagcgtggtttcagaattgatgagagaggaagagagagaacatgattaaaatcgaaaaccatatataag |
116 |
Q |
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| T |
2354935 |
acatcatattacattgtagttaaaatatgtgtagtatggtttcaaaattgatgagagaggaagagagagaacatgattaaaatcgaaaacaatatataag |
2354836 |
T |
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| Q |
117 |
tacataagtcaaatatcatatttgacattgtataaaatataattagaatgtgtggtgtaaaaattgctgaatgagagaaaaaatattaaaatcgtagatc |
216 |
Q |
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| T |
2354835 |
tacataagtcaaatatcatatttgacattgtataaaatataattagaatgtgtggtgtaaaaattgctgaatgagagaaaaaatatgaaaatcgtagatc |
2354736 |
T |
|
| Q |
217 |
acatatacatgcaatgttgatgtcgaattttgtttttgaaatatcgtgagtcgtgacatagtccatccctcacc--------------gggattcatttg |
302 |
Q |
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| T |
2354735 |
acatatacatgcaatgttgatgtcgaattttgtttttgaaatatcgtgagttgtgacatagtccat-cctcaccgactaatatagttagggattcatttg |
2354637 |
T |
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| Q |
303 |
aaggatgaaacgtatttcttctttaggctcctaaaagttccgatcacatcaagtttgtaagaaaaaactaaaatgaaaaggatattctcctttttaattt |
402 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2354636 |
aaagatgaaacgtatttcttctttaggctcctaaaagttccgatcacatcaagttagtacgaaaaaactaaaatgaaaaggatattctcctttttaattt |
2354537 |
T |
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| Q |
403 |
tgtgatgaactagtaattaagaagctaat |
431 |
Q |
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| T |
2354536 |
tgtgatgaactagtaattaagaagctaat |
2354508 |
T |
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