View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8598_low_2 (Length: 354)
Name: NF8598_low_2
Description: NF8598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8598_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 100 - 346
Target Start/End: Original strand, 31697814 - 31698060
Alignment:
| Q |
100 |
atgcataaggagtatgaaaagtgcaatttgcttcaaatatcagatctcgaaggttattcttttgaagaccaatgtgaagagattccgagataaaacgtga |
199 |
Q |
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| T |
31697814 |
atgcataaggagtatgaaaagtgcaatttgcgtcaaatatcagatctcgaaggttattcttttgaagaccaatgtgaagagattccgagatacaacgtga |
31697913 |
T |
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| Q |
200 |
agtcttttcaagcaaaggttgatcgttgttcaacattcaaaattcagtgtaataagaagcttgaaagactccaacaaagttagaagacacttaacattca |
299 |
Q |
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| T |
31697914 |
agtcttttcaagcaaaggttgatcgttgttcaacattcaaaattcagtgtaataagaagcttgaaagactccaacaaagttagaagacacttaacattca |
31698013 |
T |
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| Q |
300 |
tgcattgcaggagttagtttattttctcttaagtaaacagtataatc |
346 |
Q |
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| T |
31698014 |
tgcattgcaggagttggtttattttctcttaagtaaacagtataatc |
31698060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 31697270 - 31697351
Alignment:
| Q |
17 |
aatgacagatttttctttcttcttatccttctttgaagtttgcttctaaggaacctatgagcttaaggcacttagatcagat |
98 |
Q |
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| T |
31697270 |
aatgacagatttttctttcttcttatccttctttgaagtttacttctaaggaacctatgagcttaaggcacttagatcagat |
31697351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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