View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8599_high_2 (Length: 243)
Name: NF8599_high_2
Description: NF8599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8599_high_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 17137127 - 17137359
Alignment:
| Q |
11 |
catcagggaaaggaagattttttctgctatctaaaatggccctcaaatcctgcaaaaataaacacaaattaagtcatgatttattcaagatttcttaaac |
110 |
Q |
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| T |
17137127 |
catcagggaaaggaagattttttccgctatctaaaatggccctcaaatcctgcaaaaataaacacaaattaagtcatgatttattcaagatttcttaaac |
17137226 |
T |
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| Q |
111 |
agtgaaggctgtgtcttagttaaaacttaactctgtgatttcttttgtaccaatctcctgcctgtatggtgaaatctccggatggaggatcaaaaggtac |
210 |
Q |
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| T |
17137227 |
agtgaaggctgtttcttagttaaaacttaactgtgtgatttcttttgtaccaatctcctgccagtatggtgaaatctccggatggaggatcaaaaggtac |
17137326 |
T |
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| Q |
211 |
aggaatcacggagcgagtagcgattgtgaaacc |
243 |
Q |
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| T |
17137327 |
aggaatcacggagcgagtagcgattgtgaaacc |
17137359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 17346666 - 17346435
Alignment:
| Q |
11 |
catcagggaaaggaagattttttctgctatctaaaatggccctcaaatcctgcaaaaataaacacaaattaagtcatgatttattcaagatttcttaaac |
110 |
Q |
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|||| ||||||||||||| ||| ||||||||||||||| ||||||||||||||||| ||||||| || ||||||||| ||||||||||||||||||| |
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| T |
17346666 |
catccgggaaaggaagatcacttccgctatctaaaatggctctcaaatcctgcaaaaa-aaacacagatgaagtcatgacctattcaagatttcttaaac |
17346568 |
T |
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| Q |
111 |
agtgaaggctgtgtcttagttaaaacttaactctgtgatttcttttgtaccaatctcctgcctgtatggtgaaatctccggatggaggatcaaaaggtac |
210 |
Q |
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| T |
17346567 |
cgtgaaggctatttcttagttaaaacttaactgtgtgatttcttttgtaccaatctcctgccaatatggtgtaatctccggatggaggatcgaaaggtac |
17346468 |
T |
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| Q |
211 |
aggaatcacggagcgagtagcgattgtgaaacc |
243 |
Q |
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| T |
17346467 |
gggaatcacggagcgactagcgattgtgaaacc |
17346435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 37091862 - 37091936
Alignment:
| Q |
144 |
tgtgatttcttttgtaccaatctcctgcctgtatggtgaaatctccggatggaggatcaaaaggtacaggaatca |
218 |
Q |
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| T |
37091862 |
tgtgatttctgttgtaccaatctcctgccaatatggtgaaatcattcgatggaggaggaaacggtacaggaatca |
37091936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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