View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8599_high_3 (Length: 203)
Name: NF8599_high_3
Description: NF8599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8599_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-103; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 36202162 - 36202358
Alignment:
| Q |
1 |
atgacagttattattattattatctgaatcagtcatatcttagaattacaagcacaagcaactgatagaaaaaacaaagtcttaattcatctataccgta |
100 |
Q |
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| T |
36202162 |
atgacagttattattattattatctgaatcagtcatatcttagaattacaagcacaggcaactaatagaaaaaacaaagtcttaattcatctataccgta |
36202261 |
T |
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| Q |
101 |
ccaagcccttgtcaatctctaatctctccaaggtgatgttttccaaagtccaaactatgttcatgtttcgacttcagattttcatcatctctgcttc |
197 |
Q |
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| T |
36202262 |
ccaagcccttgtcaatctctaatctctccaaggtgatgttttccaaagtccaaactatgttcatgtttcgacttcagattttcatcatctctgcttc |
36202358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 36198800 - 36198939
Alignment:
| Q |
8 |
ttattattattattatctgaatcagtcatatcttagaattacaagcacaagcaactgatagaaaaaacaaagtcttaattcatctataccgtaccaagcc |
107 |
Q |
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| T |
36198800 |
ttattattattattctctgaactggtcatatcttaaaattacaagcacaagcaactgaccaaaaaagcaaagtgtaaattcatctatacc-taaaaagca |
36198898 |
T |
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| Q |
108 |
cttgtcaatctctaatctctccaaggtgatgttttccaaag |
148 |
Q |
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| T |
36198899 |
cttaccaatctctaatctctccaacattgtgttttccaaag |
36198939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 36214661 - 36214793
Alignment:
| Q |
14 |
ttattattatctgaatcagtcatatcttagaattacaagcacaagcaactgatagaaaaaacaaagtcttaattcatctataccgtaccaagcccttgtc |
113 |
Q |
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| T |
36214661 |
ttattattatctaaactggtcatatcttaaaattacaagcacatgcaactgaccgaataagcaaagtcttaattgatctatacca-acaaagcacttgtc |
36214759 |
T |
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| Q |
114 |
aatctctaatctctccaaggtgatgttttccaaa |
147 |
Q |
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| T |
36214760 |
aatctctaatctccccaacattgtgttttccaaa |
36214793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 36209877 - 36209923
Alignment:
| Q |
149 |
tccaaactatgttcatgtttcgacttcagattttcatcatctctgct |
195 |
Q |
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| T |
36209877 |
tccaaacgatgtgcatgtttcgacttcagattttcatcatctctgct |
36209923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 36184608 - 36184646
Alignment:
| Q |
160 |
ttcatgtttcgacttcagattttcatcatctctgcttct |
198 |
Q |
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| T |
36184608 |
ttcatgtttggacttcagattttcatcaactctgcttct |
36184646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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