View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8599_low_1 (Length: 362)

Name: NF8599_low_1
Description: NF8599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8599_low_1
NF8599_low_1
[»] chr2 (7 HSPs)
chr2 (17-353)||(16309841-16310174)
chr2 (87-172)||(36386108-36386193)
chr2 (85-138)||(1244619-1244672)
chr2 (85-187)||(10602005-10602109)
chr2 (85-164)||(29713081-29713161)
chr2 (76-172)||(14307676-14307774)
chr2 (87-137)||(22014646-22014696)
[»] chr6 (12 HSPs)
chr6 (85-138)||(7234015-7234068)
chr6 (86-164)||(19680241-19680320)
chr6 (87-164)||(4844166-4844244)
chr6 (85-138)||(26669651-26669704)
chr6 (85-164)||(30833040-30833120)
chr6 (87-161)||(17347281-17347355)
chr6 (87-144)||(20149973-20150031)
chr6 (87-144)||(22182801-22182859)
chr6 (87-167)||(22735811-22735892)
chr6 (85-117)||(1395582-1395614)
chr6 (87-123)||(13094525-13094561)
chr6 (85-172)||(24256931-24257019)
[»] chr4 (6 HSPs)
chr4 (85-164)||(49039437-49039517)
chr4 (87-172)||(21023346-21023431)
chr4 (85-124)||(41492491-41492530)
chr4 (85-138)||(35230287-35230340)
chr4 (85-124)||(33359881-33359920)
chr4 (85-117)||(24039955-24039987)
[»] chr1 (22 HSPs)
chr1 (85-164)||(9768801-9768881)
chr1 (76-132)||(48565129-48565186)
chr1 (85-172)||(50199468-50199556)
chr1 (86-137)||(3046162-3046213)
chr1 (87-164)||(9769574-9769652)
chr1 (87-164)||(13941342-13941420)
chr1 (87-164)||(25270155-25270233)
chr1 (85-172)||(1721155-1721243)
chr1 (87-135)||(3261911-3261959)
chr1 (84-124)||(27654996-27655036)
chr1 (85-164)||(43020634-43020714)
chr1 (85-124)||(3341728-3341767)
chr1 (85-124)||(41677124-41677163)
chr1 (76-134)||(49632341-49632400)
chr1 (90-164)||(9410325-9410399)
chr1 (85-172)||(12553208-12553297)
chr1 (87-124)||(195108-195145)
chr1 (87-124)||(1576115-1576152)
chr1 (85-164)||(2903019-2903099)
chr1 (85-124)||(4611222-4611262)
chr1 (85-164)||(11238020-11238100)
chr1 (85-164)||(50575924-50576004)
[»] chr8 (12 HSPs)
chr8 (87-138)||(39855149-39855200)
chr8 (85-168)||(35779774-35779856)
chr8 (85-164)||(13320446-13320525)
chr8 (85-158)||(12560060-12560134)
chr8 (87-124)||(220356-220393)
chr8 (87-124)||(689511-689548)
chr8 (87-124)||(733979-734016)
chr8 (87-124)||(857875-857912)
chr8 (85-138)||(6325320-6325372)
chr8 (87-124)||(22438578-22438615)
chr8 (85-138)||(25470838-25470891)
chr8 (85-164)||(22847254-22847334)
[»] scaffold0129 (1 HSPs)
scaffold0129 (85-161)||(7082-7159)
[»] chr5 (11 HSPs)
chr5 (87-164)||(42553135-42553212)
chr5 (85-164)||(7147011-7147091)
chr5 (85-164)||(31556841-31556921)
chr5 (85-124)||(27006404-27006443)
chr5 (85-169)||(37986859-37986944)
chr5 (87-162)||(17137861-17137937)
chr5 (86-173)||(31004123-31004211)
chr5 (85-163)||(42260712-42260791)
chr5 (76-138)||(22396971-22397033)
chr5 (87-136)||(22687875-22687924)
chr5 (85-164)||(41405080-41405160)
[»] chr3 (10 HSPs)
chr3 (87-164)||(4045628-4045706)
chr3 (90-167)||(19149444-19149522)
chr3 (85-138)||(40160785-40160838)
chr3 (85-172)||(24160520-24160608)
chr3 (85-164)||(51017813-51017892)
chr3 (85-123)||(21248982-21249020)
chr3 (85-123)||(32080120-32080158)
chr3 (85-138)||(16985070-16985123)
chr3 (87-124)||(17262283-17262320)
chr3 (85-138)||(24130609-24130662)
[»] scaffold0119 (1 HSPs)
scaffold0119 (85-138)||(1089-1142)
[»] chr7 (9 HSPs)
chr7 (87-173)||(11808052-11808140)
chr7 (85-124)||(26734263-26734302)
chr7 (85-164)||(35498421-35498500)
chr7 (87-172)||(23799315-23799401)
chr7 (87-173)||(38328561-38328647)
chr7 (87-124)||(24579280-24579317)
chr7 (85-164)||(32309140-32309220)
chr7 (85-172)||(43712305-43712393)
chr7 (87-123)||(44409265-44409301)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 16310174 - 16309841
Alignment:
Q  17 aaggagtctctttctcatattgtcaccaccttttgctcttctaaannnnnnnnngtcaatagcttagtg---ctagaattcacctttttcaaggtaaata 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||         |||||||||||||||   ||||||||||||||||||||||||||||    
T  16310174 aaggagcctctttctcatattgtcaccaccttttgctcttctaaatttttttttgtcaatagcttagtgacactagaattcacctttttcaaggtaaata 16310075  T
Q  114 agtggagtgtcagaggttcaaacccgaatcctgcaaataacaatgcatgtctctaccaatatgctcacggggactcttctaaaacttttctaatgacctc 213  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16310074 agtggagtgtcagaggttcaaatccaaatcctgcaaataacaatgcatgtctctaccaatatgctcacggggactcttctaaaacttttctaatgacctc 16309975  T
Q  214 aatatcattccaaatgtatgtatattgtgacgcatatttaattaattaatacaattattttttatacatgtatccggtaatatattgccacgtcaatact 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16309974 aatatcattccaaatgtatgtatattgtgacgcatatttaattaattaatacaattattttttatacatgtatccggtaatatattgccacgtcaatact 16309875  T
Q  314 catactcatatcaaaacacatatacacgagggagtattat 353  Q
          ||||||||||||||||||||||||||||||||||    
T  16309874 ------catatcaaaacacatatacacgagggagtattat 16309841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 36386108 - 36386193
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccgaatcctgcaaataacaatgcatgtctctaccaa 172  Q
    ||||||||| |||||| || || ||||||||| ||||| ||| |||||||||||  |||||| |||||||||||| || |||||||    
T  36386108 tagaattcatcttttttaaagtgaataagtggggtgtccgagattcaaacccgacccctgcatataacaatgcatatccctaccaa 36386193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 1244672 - 1244619
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaaccc 138  Q
    |||||||||||||||||||||||| ||||||||| ||||| | ||||| |||||    
T  1244672 gctagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccc 1244619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 10602109 - 10602005
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagagg-ttcaaaccc-gaatcctgcaaataacaatgcatgtctctaccaatatgctcacg 182  Q
    ||||||||||| ||||||||| || ||||||||| ||||| | || ||| ||||| |   |||||| |||||||||||||||||| |||| ||||||||     
T  10602109 gctagaattcatctttttcaaagtgaataagtggggtgtccgtgggttcgaaccccgtcccctgcatataacaatgcatgtctctgccaacatgctcaca 10602010  T
Q  183 gggac 187  Q
    |||||    
T  10602009 gggac 10602005  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 29713081 - 29713161
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccgaat-cctgcaaataacaatgcatgtc 164  Q
    ||||||||||| |||||| ||||||||||||| | ||||| | ||||| ||||| ||| |||||| ||||||||| |||||    
T  29713081 gctagaattcatcttttttaaggtaaataagtagggtgtctggggttcgaaccccaatccctgcatataacaatgtatgtc 29713161  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 14307676 - 14307774
Alignment:
Q  76 tagcttagtg-ctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacc-cgaatcctgcaaataacaatgcatgtctctaccaa 172  Q
    |||||||||| ||||||||||| ||||| || || ||||||||| ||||  | ||||| |||| |||  |||||| ||||||||||||||| |||||||    
T  14307676 tagcttagtggctagaattcactttttttaaagtgaataagtggggtgttcggggttcgaacctcgacccctgcatataacaatgcatgtccctaccaa 14307774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 22014646 - 22014696
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacc 137  Q
    |||||||||| ||||||||||||||||||||| ||||| | ||||| ||||    
T  22014646 tagaattcacatttttcaaggtaaataagtggggtgtctggggttcgaacc 22014696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 7234068 - 7234015
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaaccc 138  Q
    |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||    
T  7234068 gctagaattcacctttttcaaggtgaataagtggggtgtccgaggttcaaaccc 7234015  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 19680241 - 19680320
Alignment:
Q  86 ctagaattcacctttttcaaggtaaataagtggagtgtcagaggttc-aaacccgaatcctgcaaataacaatgcatgtc 164  Q
    ||||||||||||||||||||||  ||||||||| ||||| | ||||| || ||||  ||||||| |||||||||||||||    
T  19680241 ctagaattcacctttttcaaggagaataagtggggtgtccggggttcgaaccccggctcctgcatataacaatgcatgtc 19680320  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 4844244 - 4844166
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaa-cccgaatcctgcaaataacaatgcatgtc 164  Q
    |||||||||| ||||||||||| ||||||||  ||||| |||||| ||| |||||  |||||| |||||||||||||||    
T  4844244 tagaattcacttttttcaaggtgaataagtgaggtgtctgaggtttaaaccccgacccctgcatataacaatgcatgtc 4844166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 26669651 - 26669704
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaaccc 138  Q
    |||||||||||||||||||||||| ||||||||| ||||| | ||||| |||||    
T  26669651 gctagaattcacctttttcaaggtgaataagtggggtgtctggggttcgaaccc 26669704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 30833120 - 30833040
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttc-aaacccgaatcctgcaaataacaatgcatgtc 164  Q
    |||||||||| ||||||||||||  ||||||||| ||||| | ||||| || |||||  |||||| |||||||||||||||    
T  30833120 gctagaattctcctttttcaaggagaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtc 30833040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 17347355 - 17347281
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccgaatcctgcaaataacaatgcat 161  Q
    ||||||| |||||||| ||||| ||||||||| |||||  |||||| |||||||  | |||| ||||||||||||    
T  17347355 tagaatttaccttttttaaggtgaataagtggggtgtccaaggttcgaacccgacccatgcatataacaatgcat 17347281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 20149973 - 20150031
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgt-cagaggttcaaacccgaatcc 144  Q
    |||||||||||||||||||||| ||||||||| |||| ||| ||||| ||||| |||||    
T  20149973 tagaattcacctttttcaaggtgaataagtggggtgtccaggggttcgaaccccaatcc 20150031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 22182859 - 22182801
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgt-cagaggttcaaacccgaatcc 144  Q
    |||||||||||||||||||||| ||||||||| |||| ||| ||||| ||||| |||||    
T  22182859 tagaattcacctttttcaaggtgaataagtggggtgtccaggggttcgaaccccaatcc 22182801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 22735892 - 22735811
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccga-atcctgcaaataacaatgcatgtctct 167  Q
    ||||||||||||||  |||||||||||||||  ||||| | | ||||||||| | | |||||| |||||||| |||||||||    
T  22735892 tagaattcacctttcccaaggtaaataagtgaggtgtccgggattcaaaccccagaccctgcatataacaatacatgtctct 22735811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 1395582 - 1395614
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtg 117  Q
    |||||||||||||||||||||||| ||||||||    
T  1395582 gctagaattcacctttttcaaggtgaataagtg 1395614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 13094561 - 13094525
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgt 123  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  13094561 tagaattcatctttttcaaagtaaataagtggagtgt 13094525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 24257019 - 24256931
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacc-cgaatcctgcaaataacaatgcatgtctctaccaa 172  Q
    ||||||||| || ||||||||||| ||||||||| || || | ||||| |||| ||   |||||| |||| ||||||||||||||||||    
T  24257019 gctagaatttacttttttcaaggtgaataagtggggtatccggggttcgaacctcggcccctgcatataataatgcatgtctctaccaa 24256931  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 49039437 - 49039517
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccgaat-cctgcaaataacaatgcatgtc 164  Q
    |||||||||||||||||||||||| ||||||||| ||||| | ||||| ||||| | | |||||| |||||||||||||||    
T  49039437 gctagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccagtccctgcatataacaatgcatgtc 49039517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 21023346 - 21023431
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccgaatcctgcaaataacaatgcatgtctctaccaa 172  Q
    |||||||||||||||||||||| ||||||||| ||||| | ||||| ||||| || || | | |||||||||||||| ||| ||||    
T  21023346 tagaattcacctttttcaaggtgaataagtggggtgtcgggggttcgaaccccaaccccggatataacaatgcatgtttctgccaa 21023431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 41492491 - 41492530
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  41492491 gctagaattcacctttttcaaggtaaataagtggggtgtc 41492530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 35230287 - 35230340
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaaccc 138  Q
    |||| ||||||||| ||||||||||||||||||| ||||| ||||||| |||||    
T  35230287 gctaaaattcacctatttcaaggtaaataagtggggtgtccgaggttcgaaccc 35230340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 33359920 - 33359881
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  33359920 gctagaattcacctttttcaaggtgaataagtggggtgtc 33359881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 24039987 - 24039955
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtg 117  Q
    |||||||||||||||||||||||| ||||||||    
T  24039987 gctagaattcacctttttcaaggtgaataagtg 24039955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 9768801 - 9768881
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttc-aaacccgaatcctgcaaataacaatgcatgtc 164  Q
    |||||||||||||||||||||||| ||||||||| ||||| | ||||| || |||||  |||||| |||||||||||||||    
T  9768801 gctagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtc 9768881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 48565129 - 48565186
Alignment:
Q  76 tagcttagtg-ctagaattcacctttttcaaggtaaataagtggagtgtcagaggttc 132  Q
    |||||||||| |||||||||||||||||||| |||||||||||| ||||| |||||||    
T  48565129 tagcttagtgtctagaattcacctttttcaaagtaaataagtggggtgtccgaggttc 48565186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 50199468 - 50199556
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttc-aaacccgaatcctgcaaataacaatgcatgtctctaccaa 172  Q
    ||||||||| |||||||||||||| ||||||||| ||||| | ||||| || ||||   |||||| ||||||||||||||| |||||||    
T  50199468 gctagaattgacctttttcaaggtgaataagtggggtgtccggggttcgaaccccggcccctgcatataacaatgcatgtccctaccaa 50199556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 3046162 - 3046213
Alignment:
Q  86 ctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacc 137  Q
    |||||||| |||||||| ||||| ||||||||| ||||||||||||||||||    
T  3046162 ctagaatttaccttttttaaggtgaataagtggggtgtcagaggttcaaacc 3046213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 9769574 - 9769652
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccgaat-cctgcaaataacaatgcatgtc 164  Q
    |||||||||||||||||||||| ||||||||| ||||| | ||||| ||||| ||| ||| || |||| ||||||||||    
T  9769574 tagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccaatccctacatataataatgcatgtc 9769652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 13941420 - 13941342
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacc-cgaatcctgcaaataacaatgcatgtc 164  Q
    |||||||||| ||||||||| | ||||||||| ||||| || |||| |||| |||| |||||| |||||||||||||||    
T  13941420 tagaattcacttttttcaagatgaataagtggggtgtccgaagttcgaacctcgaaccctgcatataacaatgcatgtc 13941342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 25270155 - 25270233
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttc-aaacccgaatcctgcaaataacaatgcatgtc 164  Q
    ||||||||| |||||||||  ||||||||||| ||||| ||||||| || |||| ||||| || |||||||||||||||    
T  25270155 tagaattcatctttttcaaattaaataagtggggtgtccgaggttcgaatcccggatcctacatataacaatgcatgtc 25270233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 1721243 - 1721155
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttc-aaacccgaatcctgcaaataacaatgcatgtctctaccaa 172  Q
    |||||||||||||||||| ||||| ||||||||  ||||| | ||||| |||||||   |||||| ||||||||||||||  |||||||    
T  1721243 gctagaattcaccttttttaaggtgaataagtgaggtgtccggggttcgaaacccggcccctgcatataacaatgcatgttcctaccaa 1721155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 3261959 - 3261911
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaa 135  Q
    |||||||||| ||||||||||| |||||||||| |||| ||||||||||    
T  3261959 tagaattcacatttttcaaggtgaataagtggaatgtctgaggttcaaa 3261911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 27654996 - 27655036
Alignment:
Q  84 tgctagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  27654996 tgctagaattcacctttttcaaggtgaataagtggggtgtc 27655036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 43020714 - 43020634
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccgaa-tcctgcaaataacaatgcatgtc 164  Q
    |||||||||||| ||||||||||| ||| ||||| ||||| ||||||| ||||| ||  |||||| |||| ||||||||||    
T  43020714 gctagaattcacatttttcaaggtgaatgagtggggtgtccgaggttcgaaccccaacccctgcatataataatgcatgtc 43020634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 3341728 - 3341767
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  3341728 gctagaattcacctttttcaaggtgaataagtggggtgtc 3341767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 41677163 - 41677124
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  41677163 gctagaattcacctttttcaaggtgaataagtggggtgtc 41677124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 49632400 - 49632341
Alignment:
Q  76 tagcttagtgc-tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaa 134  Q
    ||||||||||| |||||||||||||||| ||||| ||||||||| ||||  |||||||||    
T  49632400 tagcttagtgcctagaattcacctttttaaaggtgaataagtggggtgtttgaggttcaa 49632341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 9410325 - 9410399
Alignment:
Q  90 aattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccgaatcctgcaaataacaatgcatgtc 164  Q
    ||||||||||||||||| | ||||||||| ||||| ||||||| || |  || |||||| ||||| |||||||||    
T  9410325 aattcacctttttcaagatgaataagtggggtgtctgaggttcgaatctcaaccctgcatataactatgcatgtc 9410399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 12553297 - 12553208
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaaccc--gaatcctgcaaataacaatgcatgtctctaccaa 172  Q
    ||||||||||||||||||||| || ||||||||| ||||| | ||||| |||||  |   |||||| ||||||||||||||  |||||||    
T  12553297 gctagaattcacctttttcaaagtgaataagtggggtgtccggggttcgaacccccggcccctgcatataacaatgcatgttcctaccaa 12553208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 195145 - 195108
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  195145 tagaattcacctttttcaaggtgaataagtggggtgtc 195108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 1576115 - 1576152
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  1576115 tagaattcacttttttcaaggtaaataagtggggtgtc 1576152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 2903019 - 2903099
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttc-aaacccgaatcctgcaaataacaatgcatgtc 164  Q
    |||||||||| ||||||||||||| ||||||||| ||||  | ||||| || |||||   ||||| |||||||||||||||    
T  2903019 gctagaattctcctttttcaaggtgaataagtggggtgttcggggttcgaaccccgacctctgcatataacaatgcatgtc 2903099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 4611222 - 4611262
Alignment:
Q  85 gctagaattcaccttt-ttcaaggtaaataagtggagtgtc 124  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  4611222 gctagaattcacctttattcaaggtaaataagtggggtgtc 4611262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 11238020 - 11238100
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttc-aaacccgaatcctgcaaataacaatgcatgtc 164  Q
    |||||||||||||||||||||| | ||||||||| ||||| | | ||| || |||||  |||||| |||| ||||||||||    
T  11238020 gctagaattcacctttttcaagatgaataagtggggtgtccgggattcgaaccccgacccctgcatataataatgcatgtc 11238100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 50576004 - 50575924
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccgaatcc-tgcaaataacaatgcatgtc 164  Q
    |||| ||||||||||||| ||||| ||||||||  ||||| ||||||| ||||| |  || |||| |||||||||||||||    
T  50576004 gctataattcaccttttttaaggtgaataagtgaggtgtctgaggttcgaaccccagcccttgcatataacaatgcatgtc 50575924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 39855149 - 39855200
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaaccc 138  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  39855149 tagaattcatcttttttaaggtaaataagtggagtgtctgaggttcaaaccc 39855200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 35779856 - 35779774
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccgaatcctgcaaataacaatgcatgtctcta 168  Q
    ||||||||||| |||||||||| | ||||||||| |||||  |||||| |||||  | |||||| |||||||||||||||||||    
T  35779856 gctagaattcatctttttcaagatgaataagtggggtgtcctaggttcgaaccccga-cctgcatataacaatgcatgtctcta 35779774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 13320446 - 13320525
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacc-cgaatcctgcaaataacaatgcatgtc 164  Q
    ||||||||| || ||||| |||||| ||||||||||| |  |||||||||||| || |||||||| |||||||||||||||    
T  13320446 gctagaatttacattttt-aaggtagataagtggagtctttgaggttcaaaccacggatcctgcatataacaatgcatgtc 13320525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 12560134 - 12560060
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccgaa-tcctgcaaataacaatg 158  Q
    ||||||||| |||||||||||||||||||||||  ||||  ||||||| ||||| ||  |||||| |||||||||    
T  12560134 gctagaattgacctttttcaaggtaaataagtgaggtgtttgaggttcgaaccccaacccctgcatataacaatg 12560060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 220356 - 220393
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  220356 tagaattcacctttttcaaggtgaataagtggggtgtc 220393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 689511 - 689548
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  689511 tagaattcacctttttcaaggtgaataagtggggtgtc 689548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 733979 - 734016
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  733979 tagaattcacctttttcaaggtgaataagtggggtgtc 734016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 857875 - 857912
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  857875 tagaattcacctttttcaaggtgaataagtggggtgtc 857912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 6325372 - 6325320
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaaccc 138  Q
    |||||||||||||||||||||||| ||| ||||| ||||| | |||||||||||    
T  6325372 gctagaattcacctttttcaaggtgaatgagtggggtgtctg-ggttcaaaccc 6325320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 22438578 - 22438615
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  22438578 tagaattcaccttttttaaggtgaataagtggagtgtc 22438615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 25470838 - 25470891
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaaccc 138  Q
    ||||||||||||||| |||||||| ||||| ||| ||||| ||||||| |||||    
T  25470838 gctagaattcaccttcttcaaggtgaataaatggggtgtccgaggttcgaaccc 25470891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 22847254 - 22847334
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacc-cgaatcctgcaaataacaatgcatgtc 164  Q
    |||||||||||||||||| ||||| ||||||||  ||||  | ||||| |||| |||  |||||| |||||||||||||||    
T  22847254 gctagaattcaccttttttaaggtgaataagtgaggtgtgtggggttcgaacctcgacccctgcatataacaatgcatgtc 22847334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 7159 - 7082
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttc-aaacccgaatcctgcaaataacaatgcat 161  Q
    |||||||||||||||||||||| | ||||||||||||||  ||||||| ||||| ||  |||||| ||||||||||||    
T  7159 gctagaattcacctttttcaagatgaataagtggagtgtatgaggttcgaaacctgacccctgcatataacaatgcat 7082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 42553135 - 42553212
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccgaatcctgcaaataacaatgcatgtc 164  Q
    |||||||||| ||||||||||| |||||||| |||||| | ||||| |||||  | |||||| |||||||||||||||    
T  42553135 tagaattcacatttttcaaggtgaataagtgtagtgtccggggttcgaaccccgaccctgcatataacaatgcatgtc 42553212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 7147011 - 7147091
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttc-aaacccgaatcctgcaaataacaatgcatgtc 164  Q
    ||||||||||||||||||||| |||||||| ||  ||||||||||||| || |||||  |||||| |||| ||||||||||    
T  7147011 gctagaattcacctttttcaatgtaaataaatgaggtgtcagaggttcgaaccccgacccctgcatataataatgcatgtc 7147091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 31556921 - 31556841
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaac-ccgaatcctgcaaataacaatgcatgtc 164  Q
    ||||||||||||| |||||||||| ||||||||| ||||| | ||||| ||| ||||  |||||| |||||||||||||||    
T  31556921 gctagaattcacccttttcaaggtgaataagtggggtgtccggggttcgaactccgacccctgcatataacaatgcatgtc 31556841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 27006443 - 27006404
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  27006443 gctagaattcacctttttcaaggtgaataagtggagtgtc 27006404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 37986859 - 37986944
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaac-ccgaatcctgcaaataacaatgcatgtctctac 169  Q
    |||||||||||||||||||||||| |||||||||  |||| | ||||||||| ||||   ||||| |||| ||||||| |||||||    
T  37986859 gctagaattcacctttttcaaggtgaataagtgggatgtccggggttcaaactccgacctctgcatataataatgcatatctctac 37986944  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 17137861 - 17137937
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttc-aaacccgaatcctgcaaataacaatgcatg 162  Q
    |||||||||| ||||||||||| ||||||||||||||| | ||||| || |||||  |||||| |||| ||||||||    
T  17137861 tagaattcacgtttttcaaggtgaataagtggagtgtcgggggttcgaaccccgatccctgcatataataatgcatg 17137937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 173
Target Start/End: Original strand, 31004123 - 31004211
Alignment:
Q  86 ctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccgaa-tcctgcaaataacaatgcatgtctctaccaat 173  Q
    |||||||| |||||||| ||||| |||||||||| |||| | ||||||||||| || | ||||  ||||||||| ||||| ||||||||    
T  31004123 ctagaatttaccttttttaaggtgaataagtggaatgtccggggttcaaaccccaacttctgcctataacaatgtatgtccctaccaat 31004211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 42260712 - 42260791
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttc-aaacccgaatcctgcaaataacaatgcatgt 163  Q
    ||||||||||| |||||| ||||| |||||||||  |||| |  |||| ||||||||| |||||| ||||||||||||||    
T  42260712 gctagaattcatctttttaaaggtgaataagtgggatgtccggagttcgaaacccgaaccctgcatataacaatgcatgt 42260791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 22396971 - 22397033
Alignment:
Q  76 tagcttagtgctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaaccc 138  Q
    |||| ||||||||||||||||| |||||||| | ||||||||| ||||| | ||||| |||||    
T  22396971 tagcctagtgctagaattcacccttttcaagatgaataagtggggtgtccggggttcgaaccc 22397033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 22687875 - 22687924
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaac 136  Q
    |||||||||||||||||||||| ||||||||| ||||  | |||||||||    
T  22687875 tagaattcacctttttcaaggtgaataagtggggtgttcggggttcaaac 22687924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 41405080 - 41405160
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggtt-caaacccgaatcctgcaaataacaatgcatgtc 164  Q
    |||| |||||||||||||||| || ||||| ||||||||| | |||| ||| |||||  | |||| |||||||||||||||    
T  41405080 gctaaaattcacctttttcaaagtgaataattggagtgtctgcggttccaaccccgacccttgcatataacaatgcatgtc 41405160  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 4045628 - 4045706
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacc-cgaatcctgcaaataacaatgcatgtc 164  Q
    |||||||||||||||||||| | ||||||||| ||||| || |||| |||| |||  |||||| |||||||||||||||    
T  4045628 tagaattcacctttttcaagatgaataagtggggtgtccgaagttcgaacctcgacccctgcatataacaatgcatgtc 4045706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 19149522 - 19149444
Alignment:
Q  90 aattcacctttttcaaggtaaataagtggagtgtcagaggttcaaaccc-gaatcctgcaaataacaatgcatgtctct 167  Q
    |||||| ||||||||| |||||||| ||||||||| | ||||||||||| ||| ||| || |||| |||||||||||||    
T  19149522 aattcatctttttcaaagtaaataaatggagtgtctggggttcaaaccctgaaccctacatataataatgcatgtctct 19149444  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 40160838 - 40160785
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaaccc 138  Q
    |||||||||||||||||| ||||| ||||||||| ||||| | |||||||||||    
T  40160838 gctagaattcacctttttaaaggtgaataagtggggtgtccggggttcaaaccc 40160785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 24160520 - 24160608
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttc-aaacccgaatcctgcaaataacaatgcatgtctctaccaa 172  Q
    ||||||||||| |||||| || || ||||||||||||||| | ||||| || |||||  |||||| |||||| ||||||||||| ||||    
T  24160520 gctagaattcaactttttgaaagtgaataagtggagtgtccggggttcgaaccccgacccctgcatataacagtgcatgtctctgccaa 24160608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 51017892 - 51017813
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaac-ccgaatcctgcaaataacaatgcatgtc 164  Q
    |||||||||||| |||||||| || ||||||||| ||||| | ||||| ||| |||| ||||||| |||||||||||||||    
T  51017892 gctagaattcacttttttcaaagtgaataagtggggtgtccg-ggttcgaactccgactcctgcatataacaatgcatgtc 51017813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 21248982 - 21249020
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgt 123  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  21248982 gctagaattcacctttttcaaggtgaataagtggggtgt 21249020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 32080158 - 32080120
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgt 123  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  32080158 gctagaattcacctttttcaaggtgaataagtggggtgt 32080120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 16985123 - 16985070
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaaccc 138  Q
    |||||||||||| ||||| || || ||||||||||||||  |||||||||||||    
T  16985123 gctagaattcactttttttaaagtgaataagtggagtgttcgaggttcaaaccc 16985070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 17262320 - 17262283
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  17262320 tagaattcacctttttcaaggtgaataagtggggtgtc 17262283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 24130662 - 24130609
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaaccc 138  Q
    ||||| ||||| |||||||||||| ||||||||| ||||| | |||||||||||    
T  24130662 gctagtattcaactttttcaaggtgaataagtggggtgtccggggttcaaaccc 24130609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 1142 - 1089
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaaccc 138  Q
    |||||||||||||||||||||||| ||||||||| ||||| | ||||| |||||    
T  1142 gctagaattcacctttttcaaggtgaataagtggggtgtctggggttcgaaccc 1089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 11808140 - 11808052
Alignment:
Q  87 tagaattcacctttttc-aaggtaaataagtggagtgtcagaggttcaaaccc-gaatcctgcaaataacaatgcatgtctctaccaat 173  Q
    |||||||||| |||||| ||||| ||||||||| ||||| | ||||| ||||| ||  |||||| ||||||||||||||| ||||||||    
T  11808140 tagaattcacgtttttctaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccctaccaat 11808052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 26734263 - 26734302
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  26734263 gctagaattcacctttttcaaggtgaataagtggggtgtc 26734302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 35498500 - 35498421
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccgaatcctgcaaataacaatgcatgtc 164  Q
    ||||||||||||||||||||| || ||||||||| ||||| || |||  ||||| |  |||||| |||| ||||||||||    
T  35498500 gctagaattcacctttttcaaagtgaataagtggggtgtccgaagtttgaacccaacccctgcatataataatgcatgtc 35498421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 23799401 - 23799315
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaa-cccgaatcctgcaaataacaatgcatgtctctaccaa 172  Q
    ||||||| |||||||| || |  ||||||||| ||||| ||||||| || |||||  |||||| |||||||||||||||||| ||||    
T  23799401 tagaattaaccttttttaaagagaataagtggggtgtccgaggttcgaatcccgacccctgcatataacaatgcatgtctctgccaa 23799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 38328561 - 38328647
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaacccgaatcctgcaaataacaatgcatgtctctaccaat 173  Q
    ||||||| |||||||||||||| ||||| ||| ||||  | ||||| ||| | | ||||||| ||||||||| ||||| ||||||||    
T  38328561 tagaattaacctttttcaaggtgaataaatggggtgtttggggttcgaactccagtcctgcatataacaatgtatgtccctaccaat 38328647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 24579280 - 24579317
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgtc 124  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  24579280 tagaattcacctttttcaaggtgaataagtggggtgtc 24579317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 32309140 - 32309220
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaac-ccgaatcctgcaaataacaatgcatgtc 164  Q
    |||||||||||| ||||| ||||| ||||| ||| ||||| ||| ||| ||| ||||  |||||| |||||||||||||||    
T  32309140 gctagaattcacattttttaaggtgaataactggggtgtctgagattcgaactccgacccctgcatataacaatgcatgtc 32309220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 43712305 - 43712393
Alignment:
Q  85 gctagaattcacctttttcaaggtaaataagtggagtgtcagaggttc-aaacccgaatcctgcaaataacaatgcatgtctctaccaa 172  Q
    |||||||||| ||||||||||||   |||||||| || || ||||||| || |||||  |||| | ||||||||||||||| |||||||    
T  43712305 gctagaattctcctttttcaaggaggataagtggggtatccgaggttcgaaccccgacccctgtatataacaatgcatgtccctaccaa 43712393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 44409301 - 44409265
Alignment:
Q  87 tagaattcacctttttcaaggtaaataagtggagtgt 123  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  44409301 tagaattcacctttttcaaggtgaataagtggggtgt 44409265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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