View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8599_low_2 (Length: 296)
Name: NF8599_low_2
Description: NF8599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8599_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 40565510 - 40565777
Alignment:
| Q |
18 |
agtatatataacattatcatgatcgatcaaaaggattagaccatttataatataaatatgtgtacaaat---tcacgtttagaatcacaactactcaacg |
114 |
Q |
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| T |
40565510 |
agtatatataacattatcatgatc----aaaaggattagaccatttataatataaatatgtatacaaataattcacgtttagaatcataactactcaacg |
40565605 |
T |
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| Q |
115 |
gtttcttttttatacataatatacaaacatggtttttgacaaaaacagaatatataacaatatttttgactggacatattatataaacatgactata--- |
211 |
Q |
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| T |
40565606 |
gtttcttttttatacataatatacaaacatggtttttgacaaaaacagaatatataacaatatttttgactggacatattatataaacatgactatatag |
40565705 |
T |
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| Q |
212 |
tagtaattgcaatgtctctaagcatgctagcttttgataatgtttaattaatttcattttgctaacacaggt |
283 |
Q |
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| T |
40565706 |
tagtaattgcaatgtctctaagcatgctagcttttgataatgtttaattaatttcattttgctaacacaggt |
40565777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 40570283 - 40570336
Alignment:
| Q |
147 |
tttttgacaaaaacagaatatataa-caatatttttgactggacatattatata |
199 |
Q |
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| T |
40570283 |
tttttgacagaaacataatatataaacaatatttttgactggaaataatatata |
40570336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 8490036 - 8490077
Alignment:
| Q |
170 |
aacaatatttttgactggacatattatataaacatgactata |
211 |
Q |
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| T |
8490036 |
aacaatatttttgactggacataatatataaacatgactata |
8490077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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