View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8600_low_1 (Length: 308)

Name: NF8600_low_1
Description: NF8600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8600_low_1
NF8600_low_1
[»] chr3 (2 HSPs)
chr3 (26-292)||(52374297-52374570)
chr3 (235-292)||(42453261-42453318)
[»] chr8 (4 HSPs)
chr8 (235-292)||(15167613-15167670)
chr8 (235-292)||(15078606-15078663)
chr8 (235-292)||(34048907-34048964)
chr8 (98-156)||(9107786-9107844)
[»] chr5 (5 HSPs)
chr5 (235-292)||(2411935-2411992)
chr5 (237-292)||(2024837-2024892)
chr5 (241-292)||(24395590-24395641)
chr5 (235-284)||(11242523-11242572)
chr5 (240-292)||(34307331-34307383)
[»] chr2 (5 HSPs)
chr2 (235-292)||(21665900-21665957)
chr2 (235-292)||(29694229-29694286)
chr2 (98-161)||(29694084-29694147)
chr2 (235-282)||(37622531-37622578)
chr2 (235-292)||(16227568-16227625)
[»] scaffold1320 (1 HSPs)
scaffold1320 (235-292)||(1202-1259)
[»] chr7 (5 HSPs)
chr7 (235-292)||(23858920-23858976)
chr7 (235-292)||(27237622-27237679)
chr7 (235-292)||(23020681-23020738)
chr7 (239-292)||(20153053-20153106)
chr7 (174-202)||(36891527-36891555)
[»] chr4 (6 HSPs)
chr4 (223-283)||(4168081-4168141)
chr4 (240-292)||(40217086-40217138)
chr4 (235-289)||(52468137-52468191)
chr4 (235-292)||(15734947-15735004)
chr4 (235-292)||(36118656-36118713)
chr4 (240-292)||(2135517-2135569)
[»] chr1 (3 HSPs)
chr1 (238-292)||(10926143-10926197)
chr1 (238-292)||(39134922-39134976)
chr1 (240-292)||(26803811-26803863)
[»] chr6 (2 HSPs)
chr6 (238-292)||(20611642-20611696)
chr6 (96-161)||(20611502-20611567)
[»] scaffold0007 (1 HSPs)
scaffold0007 (240-292)||(231059-231111)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 26 - 292
Target Start/End: Original strand, 52374297 - 52374570
Alignment:
Q  26 ttaattgttaatgtaaattaattttaaacttgaagtcattattatgtagtaagttagcatctcacaaattagcagggccggatcttggaatgtgcaagaa 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  52374297 ttaattgttaatgtaaattaattttaaacttgaagtcattattatgtagtaagttagcatctcacaaattagcggggacggatcttggaatgtgcaagaa 52374396  T
Q  126 gctcaatggagttgggcctccttaaggtatgtgtctc-nnnnnnntaatttatagtctagtagtactactaagtattaccaaactaata--ttttttctt 222  Q
    ||||||||||||||||||||| |||| ||| ||||||        |||||||     || |||||||||||||||||||||||||||||  ||||||| |    
T  52374397 gctcaatggagttgggcctccctaagatatctgtctcaaaaataataattta-----taatagtactactaagtattaccaaactaatattttttttcct 52374491  T
Q  223 tattctccttct---------cacgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    ||||| ||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  52374492 tattcgccttctttctgataccacgcgttccatcaccatcactttatcagactttccttttcttcttccccaatttgat 52374570  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 42453261 - 42453318
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||    
T  42453261 cacgcgttccatcaccatcactctatcagactttccttttcttcttccccgatttgat 42453318  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 15167670 - 15167613
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||| || |||||||    
T  15167670 cacgcgttccatcaccatcactctatcagactttccttttcttcttctccgatttgat 15167613  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 15078606 - 15078663
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||||||||||||||||||||| ||| |||||||| ||||||||||| || |||||||    
T  15078606 cacgcgttccatcaccatcactctatcagactttcattttcttcttctccgatttgat 15078663  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 34048964 - 34048907
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    ||||||||||||||||||||||  ||  |||||||||||||||||||||| |||||||    
T  34048964 cacgcgttccatcaccatcactccatcggactttccttttcttcttccccgatttgat 34048907  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 9107786 - 9107844
Alignment:
Q  98 cagggccggatcttggaatgtgcaagaagctcaatggagttgggcctccttaaggtatg 156  Q
    |||||||||||||| | | ||||||  ||||||||||||||||||||||  ||||||||    
T  9107786 cagggccggatctttggaggtgcaaacagctcaatggagttgggcctccccaaggtatg 9107844  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 2411935 - 2411992
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||| |||||||||||||||||  || |||||||||||||||||||||||||||||||    
T  2411935 cacgtgttccatcaccatcactccatcagactttccttttcttcttccccaatttgat 2411992  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 2024892 - 2024837
Alignment:
Q  237 cgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    ||||||||||||||||||||  ||  |||||||||||||||||||||| |||||||    
T  2024892 cgcgttccatcaccatcactccatctgactttccttttcttcttccccgatttgat 2024837  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 24395590 - 24395641
Alignment:
Q  241 ttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    ||||||||||||||||  || ||||||||||||||||||||||| |||||||    
T  24395590 ttccatcaccatcactccatcagactttccttttcttcttccccgatttgat 24395641  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 11242572 - 11242523
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttcccc 284  Q
    |||||||||||||| |||||||  | | ||||||||||||||||||||||    
T  11242572 cacgcgttccatcatcatcactccaatggactttccttttcttcttcccc 11242523  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 34307383 - 34307331
Alignment:
Q  240 gttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||||||||||||||||  ||  ||||||||||||||||||| || |||||||    
T  34307383 gttccatcaccatcactccatcggactttccttttcttcttctccgatttgat 34307331  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 21665957 - 21665900
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||||||||||||| |||||||  || |||||||||||||||||||||||||||||||    
T  21665957 cacgcgttccatcatcatcactccatcagactttccttttcttcttccccaatttgat 21665900  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 29694229 - 29694286
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||||||||||||||||||||||||| | | ||||||||||||||||||| |||||||    
T  29694229 cacgcgttccatcaccatcactttatcaaattttccttttcttcttccccgatttgat 29694286  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 29694084 - 29694147
Alignment:
Q  98 cagggccggatcttggaatgtgcaagaagctcaatggagttgggcctccttaaggtatgtgtct 161  Q
    |||||||| | |||||  |||||||  |||||||||||| ||||||||||||||||||| ||||    
T  29694084 cagggccgcaccttggggtgtgcaaagagctcaatggagctgggcctccttaaggtatgggtct 29694147  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 37622578 - 37622531
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttcc 282  Q
    |||||||||||||| |||||||  || |||||||||||||||||||||    
T  37622578 cacgcgttccatcatcatcactccatcagactttccttttcttcttcc 37622531  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 16227625 - 16227568
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||||||| |||||||||||||  ||  | |||||||||||||||||||| |||||||    
T  16227625 cacgcgtttcatcaccatcactccatcggcctttccttttcttcttccccgatttgat 16227568  T

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Target: scaffold1320 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 1202 - 1259
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||||||||||||||||||||| ||| |||||||| ||||||||||| || |||||||    
T  1202 cacgcgttccatcaccatcactctatcagactttcattttcttcttctccgatttgat 1259  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 23858920 - 23858976
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    ||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  23858920 cacgcgttccatcaccatcactgcatcagactt-ccttttcttcttccccaatttgat 23858976  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 27237679 - 27237622
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    ||||||||||||||||||||||  ||  |||||||||||||||||||||| |||||||    
T  27237679 cacgcgttccatcaccatcactccatcggactttccttttcttcttccccgatttgat 27237622  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 23020738 - 23020681
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||||||||||||||||||| |  ||  |||||||||||||||||||||| |||||||    
T  23020738 cacgcgttccatcaccatcattccatcggactttccttttcttcttccccgatttgat 23020681  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 20153053 - 20153106
Alignment:
Q  239 cgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    ||||||||||||||||||  ||| ||||||  |||||||||||||| |||||||    
T  20153053 cgttccatcaccatcactccattggactttgtttttcttcttccccgatttgat 20153106  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 36891527 - 36891555
Alignment:
Q  174 ttatagtctagtagtactactaagtatta 202  Q
    |||||||||||||||||||||||||||||    
T  36891527 ttatagtctagtagtactactaagtatta 36891555  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 4168141 - 4168081
Alignment:
Q  223 tattctccttctcacgcgttccatcaccatcactttattagactttccttttcttcttccc 283  Q
    ||||||| ||||||||||||||||||||||||||  ||  ||||| |||||||||||||||    
T  4168141 tattctctttctcacgcgttccatcaccatcactccatctgacttcccttttcttcttccc 4168081  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 40217086 - 40217138
Alignment:
Q  240 gttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||||||||||||||||  || ||||||||||||||||||||||| |||||||    
T  40217086 gttccatcaccatcactccatcagactttccttttcttcttccccgatttgat 40217138  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 52468137 - 52468191
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttccccaattt 289  Q
    ||||||||||||||||||||||  || ||||||||||||| ||||||||| ||||    
T  52468137 cacgcgttccatcaccatcactccatcagactttcctttttttcttccccgattt 52468191  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 15734947 - 15735004
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    ||||||||||||||| ||||||| ||| ||| ||| ||||||||||| || |||||||    
T  15734947 cacgcgttccatcactatcacttcattggacattcgttttcttcttctccgatttgat 15735004  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 36118713 - 36118656
Alignment:
Q  235 cacgcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    ||||| |||||| |||||||||  ||  |||||||||||||||||||||| |||||||    
T  36118713 cacgctttccattaccatcactccatcggactttccttttcttcttccccgatttgat 36118656  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 2135569 - 2135517
Alignment:
Q  240 gttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||| |||| |||||||  || ||||||||||||||||||||||| |||||||    
T  2135569 gttcaatcatcatcactccatcagactttccttttcttcttccccgatttgat 2135517  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 10926197 - 10926143
Alignment:
Q  238 gcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||||||||||||||||||  || |||||||||||||||||||| || |||||||    
T  10926197 gcgttccatcaccatcactccatcagactttccttttcttcttctccgatttgat 10926143  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 39134976 - 39134922
Alignment:
Q  238 gcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||||||||||||||||||  || ||| ||||||||||||||||||| |||||||    
T  39134976 gcgttccatcaccatcactccatcagattttccttttcttcttccccgatttgat 39134922  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 26803811 - 26803863
Alignment:
Q  240 gttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||||||||||||||||  || ||||||| ||||||||||| ||| |||||||    
T  26803811 gttccatcaccatcactccatcagacttttcttttcttctttcccgatttgat 26803863  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 20611642 - 20611696
Alignment:
Q  238 gcgttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
    |||||||||||||||  ||  || ||||||||||||||||||||||| |||||||    
T  20611642 gcgttccatcaccattgctccatcagactttccttttcttcttccccgatttgat 20611696  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 20611502 - 20611567
Alignment:
Q  96 agcagggccggatcttggaatgtgcaagaagctcaatggagttgggcctccttaaggtatgtgtct 161  Q
    ||||||| |||| |||||  |||||||  |||||||||||| ||||||||| ||||||||| ||||    
T  20611502 agcagggtcggaccttggggtgtgcaaagagctcaatggagctgggcctccctaaggtatgggtct 20611567  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 231111 - 231059
Alignment:
Q  240 gttccatcaccatcactttattagactttccttttcttcttccccaatttgat 292  Q
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T  231111 gttccatcaacatcactccatcagactttccttttcttcttccctgatttgat 231059  T

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