View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8600_low_2 (Length: 302)
Name: NF8600_low_2
Description: NF8600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8600_low_2 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 75563 - 75838
Alignment:
| Q |
18 |
cttttgggaaaaccaaccaaaaccataaaaattcctcatctttgccagatctatagttaatgtgactcactcatattctgttctgacaaaagaattctaa |
117 |
Q |
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| T |
75563 |
cttttgggaaaaccaaccaaaaccataaaaattcctcatctttgccagatctatagttaatgtgactcactcatattctgttctgacaaaagaattctaa |
75662 |
T |
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| Q |
118 |
tctcaaaagaggggctcttgcaaaagagtttgattttgca-nnnnnnnnaaatgtttggtagaaaaatataatttgtatttagaatacttttttctttct |
216 |
Q |
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| T |
75663 |
tctcaaaagaggggctcttgcaaaagagtttgattttgcatttttttttaaatgtttggtagaaaaatataatttgtatttagaatacttttttctttct |
75762 |
T |
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| Q |
217 |
agattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacaggttctg |
292 |
Q |
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| T |
75763 |
agattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacatgttctg |
75838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 28484766 - 28484679
Alignment:
| Q |
195 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc |
282 |
Q |
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| T |
28484766 |
tttagaatactcctttctttctagattgaggataacaaagggatatactaactgcacttcattcattttgtattttcttactattctc |
28484679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 291
Target Start/End: Complemental strand, 29715238 - 29715155
Alignment:
| Q |
208 |
tttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacaggttct |
291 |
Q |
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| T |
29715238 |
tttctttctagattgacgataataaagggatatactaactgcacttcattcattttgtattttcttactattctcccatgttct |
29715155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 29797178 - 29797091
Alignment:
| Q |
195 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc |
282 |
Q |
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| T |
29797178 |
tttagaatactcctttctttctagattgaggataacaaagggatatactaactgcacttcattcattttgtattttcttactattctc |
29797091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 28500489 - 28500408
Alignment:
| Q |
195 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttact |
276 |
Q |
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| T |
28500489 |
tttagaatactcctctctttctagattgacgactagaaagggatttactaactacacttcattcattttgtattttcttact |
28500408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 29708079 - 29708014
Alignment:
| Q |
226 |
acaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacaggttct |
291 |
Q |
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| T |
29708079 |
acaagaaatggatttactaactgcactttattcattttgtattttcttagtattctcacatgttct |
29708014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 29812900 - 29812819
Alignment:
| Q |
195 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttact |
276 |
Q |
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| T |
29812900 |
tttagaatactcctctctttctagattgacgactagaaagggatttactaactacacttcattcattttgtattttcttact |
29812819 |
T |
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