View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8600_low_4 (Length: 288)
Name: NF8600_low_4
Description: NF8600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8600_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 36 - 274
Target Start/End: Original strand, 3750762 - 3750998
Alignment:
| Q |
36 |
atcttacactattttaacacacaggctaagttgataatgtaaggnnnnnnngatgctgtagggtcatttcttgaatttgtgtgatccaaaattatgaagg |
135 |
Q |
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| T |
3750762 |
atcttacactattttaacacacaggctaagttgataatgtaaggaaaaaaagatgctgtagggtcatttcctgaatttgtgtgatccaa--ttatgaagg |
3750859 |
T |
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| Q |
136 |
gagtgaagctaccaaacaaacaaggattccacaaagtcaagctatataattaaatcttaaggtccactttgaatgctttcaatctttatgggtcttgttc |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3750860 |
gagtgaagctaccaaacaaacaaggattccacaaagtcaagctatataattaaatcttaaggtccactttgaatgctttcaatctttatgggtcttgttc |
3750959 |
T |
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| Q |
236 |
aatctttcaagctaaattagtgtaattaggttcaatatg |
274 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
3750960 |
aatcattcaagctaaattagtgtaattaggttcaatatg |
3750998 |
T |
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