View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_high_2 (Length: 503)
Name: NF8601_high_2
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 12 - 487
Target Start/End: Original strand, 38759932 - 38760409
Alignment:
| Q |
12 |
acatcaaaatccctatgcctagtttagttagccaaagaattctaccaggtgtggaaacagccaaatagctactaaattatctattctgaacttagatcca |
111 |
Q |
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| T |
38759932 |
acatcagaatccctatgcctagtttagttagccaaagaattctaccaggtgtggaaacagccaaatagctactaaattatttattctgaacttagatcca |
38760031 |
T |
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| Q |
112 |
tnnnnnnntcacaggaattaggaagcaatcaaatacagaatattgtacctgaggtggggtatgcccaagaagttcacggagcggtctgctgtcggataga |
211 |
Q |
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| T |
38760032 |
taaaaaaatcacaggaattaggaagcaatcaaatgcagaatattgtacctgaggtggggtatgcccaagaagttcacgaagcggtctgctgtcggataga |
38760131 |
T |
|
| Q |
212 |
ggatgttcagcaggaagttcaatgacaatttggttaagaacctgaaaaaagccggtcattcaaactcagtaaagacaaattggatcaatcaaaacaaata |
311 |
Q |
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| T |
38760132 |
ggatgttcagcaggaagttcaatgacaatttggttaagaacctgaaaaaagccagtcattcaaactcagtaaagacaaattggatcaatcaaaacaaata |
38760231 |
T |
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| Q |
312 |
aaaatgtcatggaccttaatatcataggtaaacagaagaacatttctatagcatttctagtctcgtcactggcatg--nnnnnnnnnctaacaggagaat |
409 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
38760232 |
aaaatgtcatgcaccttaatatcataggtaaacagaagaacatttctatagcatttctagtctcgtcactggcatgaaaaaaaaaaacaaacaggagaag |
38760331 |
T |
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| Q |
410 |
gcatcaaacctcggcttggcgtcctgcttgcaatcttacaccagtagcatcatacatcacctgcaagcagcaatatct |
487 |
Q |
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| T |
38760332 |
gcatcaaacctcggcttggcgtcctgcttgcaatcttacaccagtagcatcatacatcacctgcaagcagcaatatct |
38760409 |
T |
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