View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_high_21 (Length: 241)
Name: NF8601_high_21
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_high_21 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 3016990 - 3017221
Alignment:
| Q |
10 |
acatcaccaatccatatcacggctcagacaagatcaccataggagatggtaatactcttcccatatctcatgttggtaaggccaatttatctattcaaaa |
109 |
Q |
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| T |
3016990 |
acatcaccaatccatatcacggctcagacaagatcatcataggagatggtaatactcttcccatatctcatgttggtaaggccaatttatctattcaaaa |
3017089 |
T |
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| Q |
110 |
gcacactttacaccttcccaaagtccttcatgtccctcatatttcttgcaaattattatctgtttccaacttatgcaagactaacccaatttctattgaa |
209 |
Q |
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| T |
3017090 |
gcacactttacaccttcccaaagtccttcatgtccctcatatttcttgcaaattattatctgtctccaacttatgcaagactaacccaatttctattgaa |
3017189 |
T |
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| Q |
210 |
ttctttcatgattattacttggtaaaggactt |
241 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3017190 |
ttctttcatgattattacttggtaaaggactt |
3017221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 42361085 - 42360979
Alignment:
| Q |
135 |
cttcatgtccctcatatttcttgcaaattattatctgtttccaacttatgcaagactaacccaatttctattgaattctttcatgattattacttggtaa |
234 |
Q |
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|||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42361085 |
cttcatatccctcatatttcttgcaaattattatccgtctccaacttatgcaagactaaccaaatttctattgaattctttcatgattattacttggtaa |
42360986 |
T |
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| Q |
235 |
aggactt |
241 |
Q |
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| T |
42360985 |
aggactt |
42360979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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