View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_high_23 (Length: 223)
Name: NF8601_high_23
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 42950442 - 42950634
Alignment:
| Q |
1 |
cattctgtaccctttgtcccctaggtttttcatcactgctttgatcatccttcatcatgatcataattattacagccagtaatttattcagctaaatatg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42950442 |
cattctgtaccctttgtcccctagtgttttcatcactgctttgattgtccttcatcatgatcataattattacagccagtaatttattcagctaaatatg |
42950541 |
T |
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| Q |
101 |
cctttgttcttgaatatgtcaaacttgtttaatttttgttgttggtgatttattgaatgaatctgtctagttaggagttaggactgccatttc |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
42950542 |
cctttgttcttgaatatgtcaaacttgtttaatttttgttattggtgatttattgaatgaatctgtttagttaggagttaggactgtcatttc |
42950634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 56 - 193
Target Start/End: Original strand, 2852094 - 2852231
Alignment:
| Q |
56 |
catgatcataattattacagccagtaatttattcagctaaatatgcctttgttcttgaatatgtcaaacttgtttaatttttgttgttggtgatttattg |
155 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2852094 |
catgataataattattacagccagtaatttattcagctaaatatgcctttgttgttgaatatgtcaagcttgtttaatttttgttgttggtgatttattg |
2852193 |
T |
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| Q |
156 |
aatgaatctgtctagttaggagttaggactgccatttc |
193 |
Q |
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|||||||| |||||| ||| ||||||||||||| |||| |
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| T |
2852194 |
aatgaatcggtctagctagaagttaggactgccttttc |
2852231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 56 - 193
Target Start/End: Original strand, 2904126 - 2904263
Alignment:
| Q |
56 |
catgatcataattattacagccagtaatttattcagctaaatatgcctttgttcttgaatatgtcaaacttgtttaatttttgttgttggtgatttattg |
155 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2904126 |
catgataataattattacagccagtaatttattcagctaaatatgcctttgttgttgaatatgtcaagcttgtttaatttttgttgttggtgatttattg |
2904225 |
T |
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| Q |
156 |
aatgaatctgtctagttaggagttaggactgccatttc |
193 |
Q |
| |
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|||||||| |||||| ||| ||||||||||||| |||| |
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| T |
2904226 |
aatgaatcggtctagctagaagttaggactgccttttc |
2904263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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