View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_high_24 (Length: 222)
Name: NF8601_high_24
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_high_24 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 15921456 - 15921243
Alignment:
| Q |
10 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccactcatccgtcttatttgctaccactcgaattcctgctgt |
109 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
15921456 |
taggaagccttaattctccactaaaccatttagacttgaacgaaatgttactccagttccactcatctgtcttatttgctaccactcgaattcctactgt |
15921357 |
T |
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| Q |
110 |
ctttagatcccgtatgctcttataagtattccaattcgaattaatttcttccttatccctgtcttcttggtcttgatttgta-tttttccgcatcgaatt |
208 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||||||||||| ||||| ||||||||||| ||| | |
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| T |
15921356 |
ttttagatcccgtatgctcttataagtattccaattaaaattaatatcttcctcatcactgtcttcttggtcttgagttgtattttttccgcattgaact |
15921257 |
T |
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| Q |
209 |
atgttcacctcctt |
222 |
Q |
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|||||||||||||| |
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| T |
15921256 |
atgttcacctcctt |
15921243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 15873641 - 15873853
Alignment:
| Q |
10 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccactcatccgtcttatttgctaccactcgaattcctgctgt |
109 |
Q |
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||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||| |
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| T |
15873641 |
taggaagccttagttctccattaaaccatttagacgtgaacgaaatgttactccagttccactcatctgtcttatttgctaccacttgaattcctactgt |
15873740 |
T |
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| Q |
110 |
ctttagatcccgtatgctcttataagtattccaattcgaattaatttcttccttatccctgtcttcttggtcttgatttgtatttttccgcatcgaatta |
209 |
Q |
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| T |
15873741 |
ctttagatcccgtatgctcttataagtattccaattcaaattaatttcttcctcatcaatatcttcttggtcttgagttttatttttcctcatcgaattg |
15873840 |
T |
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| Q |
210 |
tgttcacctcctt |
222 |
Q |
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| T |
15873841 |
tgttcacttcctt |
15873853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 15900406 - 15900220
Alignment:
| Q |
10 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccactcatccgtcttatttgctaccactcgaattcctgctgt |
109 |
Q |
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||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||| |||||||||||||||||| |||||||| |||| |
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| T |
15900406 |
taggaagccttagttcgccactaaaccatttagacttgaaagaaatgttactccaggtccacttatctgtcttatttgctaccacttgaattcctactgt |
15900307 |
T |
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| Q |
110 |
ctttagatcccgtatgctcttataagtattccaattcgaattaatttcttccttatccctgtcttcttggtcttgatttgtattttt |
196 |
Q |
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| T |
15900306 |
ttttagatcccgtatgctcttataagtattccaattgaaatcaatttctggcttatcactatctttttggtcttgctttgtattttt |
15900220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 14060054 - 14060189
Alignment:
| Q |
10 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccactcatccgtcttatttgctaccactcgaattcctgctgt |
109 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||| |||| |||| |||||||||| | ||||||||||||| | | |
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| T |
14060054 |
taggaagtcttagttctccactcaaccacttagacttgaaagaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattat |
14060153 |
T |
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| Q |
110 |
ctttagatcccgtatgctcttataagtattccaatt |
145 |
Q |
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| T |
14060154 |
ttttagatcccttatgcttttataagtattccaatt |
14060189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 14048683 - 14048815
Alignment:
| Q |
10 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccactcatccgtcttatttgctaccactcgaattcctgctgt |
109 |
Q |
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||||||||| |||||||||||| ||||| ||||||||||| |||| ||||||||| |||| |||| |||||||||| | ||||||||||||| | | |
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| T |
14048683 |
taggaagtcgtagttctccactcaaccacttagacttgaaggaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctaccat |
14048782 |
T |
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| Q |
110 |
ctttagatcccgtatgctcttataagtattcca |
142 |
Q |
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|||||||||| |||||| |||||||||||||| |
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| T |
14048783 |
ttttagatcccttatgcttttataagtattcca |
14048815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 15880450 - 15880511
Alignment:
| Q |
10 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccac |
71 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15880450 |
taggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
15880511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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