View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8601_low_1 (Length: 1068)

Name: NF8601_low_1
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8601_low_1
NF8601_low_1
[»] chr5 (3 HSPs)
chr5 (20-570)||(15376508-15377060)
chr5 (571-1037)||(15376005-15376474)
chr5 (979-1026)||(18757384-18757431)
[»] chr4 (2 HSPs)
chr4 (970-1033)||(10581574-10581637)
chr4 (397-447)||(45122313-45122363)
[»] chr2 (1 HSPs)
chr2 (968-1026)||(36461454-36461512)
[»] chr8 (1 HSPs)
chr8 (968-1033)||(24209531-24209596)
[»] chr1 (2 HSPs)
chr1 (397-492)||(6219603-6219698)
chr1 (458-503)||(7790319-7790364)
[»] chr3 (3 HSPs)
chr3 (458-528)||(33429089-33429159)
chr3 (458-527)||(1163424-1163493)
chr3 (788-831)||(35052456-35052499)
[»] scaffold0032 (1 HSPs)
scaffold0032 (978-1026)||(25196-25244)
[»] chr7 (4 HSPs)
chr7 (458-533)||(12427929-12428004)
chr7 (786-829)||(23940521-23940564)
chr7 (786-819)||(26979703-26979736)
chr7 (458-507)||(42709956-42710005)
[»] chr6 (1 HSPs)
chr6 (480-527)||(32520093-32520140)
[»] scaffold0340 (1 HSPs)
scaffold0340 (479-565)||(10937-11023)


Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 570
Target Start/End: Complemental strand, 15377060 - 15376508
Alignment:
Q  20 cggagtcggtgaaaaagttggagtatgaaatcgacatcgaga-------agattcattctgttgttgtcatggttttgggatgatcggagaaatcgccgg 112  Q
    ||||||||||||| ||||||||||||||||||||||||| ||       |||||||||| | |||| ||||||||||||||||||||||||| |||||||    
T  15377060 cggagtcggtgaagaagttggagtatgaaatcgacatcgggagtggatgagattcattccggtgttatcatggttttgggatgatcggagaagtcgccgg 15376961  T
Q  113 aggttgatcggagaagtcgccgccggagtggatagcgttgatggtggtgagagtgtgaagtgggagagagtgtgggttgttgatgaaaggtacttgttgt 212  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15376960 aggttgatcggagaagttgccgccggagaggatagcgttgatggtggtgagagtgtgaagtgggagagagtgtgggttgttgatgaaaggtacttgttgt 15376861  T
Q  213 aagtgctttgggtgtttgtttgaatataaatatgcgattttggaaggagatttttggtttcccggg-nnnnnnntgggttttctgattttttagcgccag 311  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  15376860 aagttctttgagtgtttgtttgaatataaatatgcgattttggaaggagatttttggtttcccgggaaaaaaaatgggttttctgattttttagcgccag 15376761  T
Q  312 ttgtacaaagcatgtgcttgtggagggtgaaaattacctcaacaaccccttggtaaaatttagtga----tacttatttttaaaatagaagtaaaccatc 407  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    || ||||||||||||||||| |||| ||||    
T  15376760 ttgtacaaagcatgtgcttgtggaggcagaaaattacctcaacaaccccttggtaaaatttagtgatatttatttatttttaaaatagaaataaatcatc 15376661  T
Q  408 aaattgatttatgtttatgtaagtcattctaaaagtaatatttgattatgttaatattttaaactatttaatgtctttgtcaaaagttttttaattaagt 507  Q
              || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15376660 ----------atatttctgtaagtcattctaaaagtaatatttgattatgttaatattttaaactatttaatgtctttgtcaaaagttttttaattaagt 15376571  T
Q  508 ttatcgtcatgtgataaaaacgtaaaaataaatattaaattgagaaatttttcacaaaatcag 570  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| ||||    
T  15376570 ttatcgtcatgtgataaaaacgtaaagataaagatcaaattgagaaatttttcacaaagtcag 15376508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 571 - 1037
Target Start/End: Complemental strand, 15376474 - 15376005
Alignment:
Q  571 tagtttgaaattggcttataaagacaggggtcaatttggtggtttacttctaaaaataggttttgtctacgaatgatattgcattgtatacaagtgtttt 670  Q
    |||||||| |||| ||||||||||  || |||||||||||||||||||  | |||||||||||||||||| |||||||||||||||||||||||||||||    
T  15376474 tagtttgagattgacttataaagatcggagtcaatttggtggtttactattgaaaataggttttgtctacaaatgatattgcattgtatacaagtgtttt 15376375  T
Q  671 t-ctactattggatnnnnnnntcacatcatgtttcatttaannnnnnnnn--ctttctaagaaacatgtttcattcaacttaacagttagatttattgac 767  Q
    | ||||||||||||       ||||||||||||||||||||           |||||||||||||| ||||||||||||||||| |||||||||||||||    
T  15376374 ttctactattggataaaaaaatcacatcatgtttcatttaatttttttctttctttctaagaaacaggtttcattcaacttaacggttagatttattgac 15376275  T
Q  768 aaattgatgcaaattacgttgtgcatgatgcaagatttatctcacttgtgcattatagaattggacaattaatattacctttgttaaaattaacaataat 867  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15376274 aaattgaaggaaattacgttgtgcatgatgcaagatttatctcacttgtgtattatagaattggacaattaacattacctttgttaaaattaacaataat 15376175  T
Q  868 aatcatgtaagacaactcaattggtagctccaatgaaaataatatgtagagaccgatgttatcataattgtttaacgtgatcaagtcaatatcatgttaa 967  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15376174 aatcatgtaagacaactcaattggtagctccaatgaaaataatatgtagagaccgatgttatcataattgtttaacgtgatcaagtcaatatcatgttaa 15376075  T
Q  968 acaattatgataacatcctgatcaagttaggcattcatctaagcatatcaatttgaaagtattaaaatat 1037  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15376074 acaattatgataacatcctgatcaagttaggcattcatctaagcatatcaatttgaaagtattaaaatat 15376005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 979 - 1026
Target Start/End: Complemental strand, 18757431 - 18757384
Alignment:
Q  979 aacatcctgatcaagttaggcattcatctaagcatatcaatttgaaag 1026  Q
    ||||||||||||||||||||||||||| ||||||| | | ||||||||    
T  18757431 aacatcctgatcaagttaggcattcatttaagcatgttagtttgaaag 18757384  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 970 - 1033
Target Start/End: Complemental strand, 10581637 - 10581574
Alignment:
Q  970 aattatgataacatcctgatcaagttaggcattcatctaagcatatcaatttgaaagtattaaa 1033  Q
    ||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||| ||||||    
T  10581637 aattatgctaacatcctgatcaagttagacattcatataagcatattaatttgaaagcattaaa 10581574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 397 - 447
Target Start/End: Original strand, 45122313 - 45122363
Alignment:
Q  397 agtaaaccatcaaattgatttatgtttatgtaagtcattctaaaagtaata 447  Q
    ||||||||||||||||||| ||||||| ||||||||||||| ||| |||||    
T  45122313 agtaaaccatcaaattgatctatgtttttgtaagtcattcttaaattaata 45122363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 968 - 1026
Target Start/End: Complemental strand, 36461512 - 36461454
Alignment:
Q  968 acaattatgataacatcctgatcaagttaggcattcatctaagcatatcaatttgaaag 1026  Q
    ||||||||| |||||| || |||||| ||||||||||||||||||||||| ||||||||    
T  36461512 acaattatgctaacattctaatcaagctaggcattcatctaagcatatcagtttgaaag 36461454  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 968 - 1033
Target Start/End: Original strand, 24209531 - 24209596
Alignment:
Q  968 acaattatgataacatcctgatcaagttaggcattcatctaagcatatcaatttgaaagtattaaa 1033  Q
    ||||||||| |||||||| ||| ||||||| |||||||||||| |||||| |||||||| ||||||    
T  24209531 acaattatgttaacatcccgattaagttagacattcatctaagtatatcagtttgaaagcattaaa 24209596  T

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Target: chr1 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 397 - 492
Target Start/End: Original strand, 6219603 - 6219698
Alignment:
Q  397 agtaaaccatcaaattgatttatgtttatgtaagtcattctaaaagtaatatttgattatgttaatattttaaactatttaatgtctttgtcaaaa 492  Q
    ||||||||||||||||||||| ||| | | ||||||||||| ||| || | | ||||| | ||||||||||||| || | | ||||||||||||||    
T  6219603 agtaaaccatcaaattgatttttgtctttataagtcattcttaaactagtctatgattttattaatattttaaattagtcactgtctttgtcaaaa 6219698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 458 - 503
Target Start/End: Original strand, 7790319 - 7790364
Alignment:
Q  458 ttaatattttaaactatttaatgtctttgtcaaaagttttttaatt 503  Q
    ||||||||||||| || ||  |||||||||||||||||||||||||    
T  7790319 ttaatattttaaattaatttttgtctttgtcaaaagttttttaatt 7790364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 33429159 - 33429089
Alignment:
Q  458 ttaatattttaaactatttaatgtctttgtcaaaagttttttaattaagtttatcgtcatgtgataaaaac 528  Q
    ||||||||||||| || | ||| ||||| |||||||||||| |||||||| | ||||||||||| ||||||    
T  33429159 ttaatattttaaaataatcaatatctttatcaaaagtttttcaattaagtctttcgtcatgtgacaaaaac 33429089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 458 - 527
Target Start/End: Original strand, 1163424 - 1163493
Alignment:
Q  458 ttaatattttaaactatttaatgtctttgtcaaaagttttttaattaagtttatcgtcatgtgataaaaa 527  Q
    ||||||||||||| || || |||| |||||||||||||| | |||||||| | ||||||||||| |||||    
T  1163424 ttaatattttaaaatagtttatgtgtttgtcaaaagtttctcaattaagtctctcgtcatgtgaaaaaaa 1163493  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 788 - 831
Target Start/End: Complemental strand, 35052499 - 35052456
Alignment:
Q  788 gtgcatgatgcaagatttatctcacttgtgcattatagaattgg 831  Q
    ||||||||||||| |||| ||||||||||||| |||||||||||    
T  35052499 gtgcatgatgcaaaatttgtctcacttgtgcactatagaattgg 35052456  T

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Target: scaffold0032 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 978 - 1026
Target Start/End: Complemental strand, 25244 - 25196
Alignment:
Q  978 taacatcctgatcaagttaggcattcatctaagcatatcaatttgaaag 1026  Q
    |||||||||||||||||||||||| |||| ||||||||  |||||||||    
T  25244 taacatcctgatcaagttaggcatacatccaagcatattcatttgaaag 25196  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 533
Target Start/End: Complemental strand, 12428004 - 12427929
Alignment:
Q  458 ttaatattttaaactatttaatgtctttgtcaaaagttttttaattaagtttatcgtcatgtgataaaaacgtaaa 533  Q
    ||||||||| |||||| |  ||||||||||||||||||||| ||||  || | ||||||||||| |||||| ||||    
T  12428004 ttaatatttcaaactagtccatgtctttgtcaaaagtttttcaatttggtctctcgtcatgtgacaaaaacataaa 12427929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 786 - 829
Target Start/End: Complemental strand, 23940564 - 23940521
Alignment:
Q  786 ttgtgcatgatgcaagatttatctcacttgtgcattatagaatt 829  Q
    |||||||||||||||||  |||||||||||||||| ||||||||    
T  23940564 ttgtgcatgatgcaagacatatctcacttgtgcatcatagaatt 23940521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 786 - 819
Target Start/End: Original strand, 26979703 - 26979736
Alignment:
Q  786 ttgtgcatgatgcaagatttatctcacttgtgca 819  Q
    ||||||||||| ||||||||||||||||||||||    
T  26979703 ttgtgcatgatacaagatttatctcacttgtgca 26979736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 458 - 507
Target Start/End: Original strand, 42709956 - 42710005
Alignment:
Q  458 ttaatattttaaactatttaatgtctttgtcaaaagttttttaattaagt 507  Q
    ||||||||||||| || | |||||||||||||||||||| | ||||||||    
T  42709956 ttaatattttaaaatagtcaatgtctttgtcaaaagtttctcaattaagt 42710005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 527
Target Start/End: Original strand, 32520093 - 32520140
Alignment:
Q  480 gtctttgtcaaaagttttttaattaagtttatcgtcatgtgataaaaa 527  Q
    ||||||||||||||||||| |||||||| | ||||||||||| |||||    
T  32520093 gtctttgtcaaaagtttttcaattaagtgtctcgtcatgtgacaaaaa 32520140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 479 - 565
Target Start/End: Complemental strand, 11023 - 10937
Alignment:
Q  479 tgtctttgtcaaaagttttttaattaagtttatcgtcatgtgataaaaacgtaaaaataaatattaaattgagaaatttttcacaaa 565  Q
    ||||||| |||||||||||| |||||||| | ||||| ||||| |||||| || ||| | | ||| |||||||||| |||| |||||    
T  11023 tgtctttatcaaaagtttttcaattaagtctctcgtcgtgtgaaaaaaacatagaaacataaatttaattgagaaacttttgacaaa 10937  T

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