View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_low_11 (Length: 472)
Name: NF8601_low_11
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 41855057 - 41854603
Alignment:
| Q |
18 |
agcttaataatcttttataaaatcatgacttgtaagaacatgggcctatcattaaccaataataataacttatcacagtgaagtggacttggtcagcatt |
117 |
Q |
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| T |
41855057 |
agcttaataatcttttataaaatcatgacttgtaagaacatgggcctatcattaaccaataataataacttatcacagtgaagtggacttggtcagcatt |
41854958 |
T |
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| Q |
118 |
ctattggtcactggtcactgaccacatctctagtctttttagctgaaaaactcggtttcttagtcaaacttagactttcaaccctccaacactcatatct |
217 |
Q |
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| T |
41854957 |
ctattggtcactggtcactgaccacatctctagtctttttagctgaaaaactcggtttcttagtcaaacttagactttcaaccctccaacactcatatct |
41854858 |
T |
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| Q |
218 |
ttgctcccttagttgctcactttaaatacaaggctttcatttccttcattcagcagaacaaaattagctctcaataagatttcctaccctcactccaaca |
317 |
Q |
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| T |
41854857 |
ttgctcccttagttgctcactttaaatacaaggctttcatttccttcattcagcagaacaaaattagcactcaataagatttcctaccctcactccaaca |
41854758 |
T |
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| Q |
318 |
atccattcaacaaagaaaatatttcatttgaattttcaaatctatttcacattattatgctttacaattcaaacatcatcctaaatttcttcagtatcca |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41854757 |
atccattcaacaaagaaaatatttcatttgaattttcaaatctatttcacattattatgctttacaattcaaacaatatcctaaatttcttcagtatcca |
41854658 |
T |
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| Q |
418 |
acactgcctctcagtaagaaactattggttctagaaagaaaagtgcactttcaga |
472 |
Q |
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| T |
41854657 |
actctgcctctcagtaagaaactattagttctagaaagaaaagtgcactttcaga |
41854603 |
T |
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