View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_low_13 (Length: 456)
Name: NF8601_low_13
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 14 - 456
Target Start/End: Complemental strand, 32818484 - 32818042
Alignment:
| Q |
14 |
acatcaaaaaattcggaaagcataagtttgtttaattgcaatatactagtgagcaaaaatataaacaagaaattatgaacacatggcactaatgtggcaa |
113 |
Q |
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| T |
32818484 |
acatcaaaaaattcggaaagcataagtttgtttaattgcaatatactagtgagcaaaaatataaacaagaaattacgaacacatggcactaatgtggcaa |
32818385 |
T |
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| Q |
114 |
taaaaacaacgacaaggtctaaagtgcatttgcaattaagtggtaaaggcacacctctgattttgaccaaattagagttcacgtatgattggaattgcgt |
213 |
Q |
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| T |
32818384 |
taaaaacaacgacaaggtctaaagtgcatttgcaattaagtggtaaaggcacacctctgattttgaccaaattagagttcacgtatgattggaattgcgt |
32818285 |
T |
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| Q |
214 |
aaggcacccaaatctcgcctcccaagtcccaatgtcttttttacatggttccttcgatactacaaattgttgacttgacatgcgtttaacaatttgtggc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32818284 |
aaggcacccaaatctcgcctcccaagtcccaatgtcttttttacatggttccttcgatactacaaattgttgacttgacatgcgtttaacaatttgtggc |
32818185 |
T |
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| Q |
314 |
tgcaaaaagagactcgtaccatttaataaagcttatcacaaaaagatgttaatagaacaagtatgtggtatatggctaatcgtgaagtggttactatgaa |
413 |
Q |
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| T |
32818184 |
tgcaaaaagagactcgtaccatttaataaagcttatcacaaaaagatgttaatagaacgagtatgtggtatatggctaatcgtgaagtggttactatgaa |
32818085 |
T |
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| Q |
414 |
actgaacctgcttaattcaaataagatgttgtaaatcacaagc |
456 |
Q |
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| T |
32818084 |
actgaacctgcttaattaaaataagatgttgtaaatcacaagc |
32818042 |
T |
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