View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_low_16 (Length: 444)
Name: NF8601_low_16
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 11747113 - 11746700
Alignment:
| Q |
19 |
aacatatccaaatttgttaggcacatacacaacaaaaaatacagatcatttaattatgatgtaatagtattataaggatcctatat--cttcttgtattc |
116 |
Q |
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| T |
11747113 |
aacatatccaaatttgttaggcacatacacaacaaaaaatacacatcatttaattatgaggtaatagtattagaaggatcctatatatcttcttatattc |
11747014 |
T |
|
| Q |
117 |
tattatattattgtaacaatttcagtagacgagggagaggaaaaaatgaaagacaaaataagttttcaatttccgtaacataccagacaactttaataat |
216 |
Q |
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| T |
11747013 |
tattatattattgtaacaatttcagtagagcggggagaggaaaaaactaaagacaaaataagttttgaatttccgtaacataccggacaactttaataat |
11746914 |
T |
|
| Q |
217 |
actgaattctgaaatgatacatgaataagcacgcgtaatcgacctgaaaaaatgtgaagnnnnnnngattcatgttatttaaacatcatatacatgtcac |
316 |
Q |
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| T |
11746913 |
actgaattctgaaatgatacatgaataagcacgcgtaatcgacctgaaaaaatgtgaagaaaaaaagagtcatgttatttaaacatcatatacatgtcac |
11746814 |
T |
|
| Q |
317 |
atgtgacattgtgtatactccctctcacttttaaccttctacaacttacacaaatttaaaacaagacagataaatatcaaaagatattgtatttgacgtt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11746813 |
atgtgacattgtgtatactccctctcacttttaaccttctacaacttacacaaattttaaacaagacagataaatatcaaaagatattgtatttgacgtt |
11746714 |
T |
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| Q |
417 |
aaagttttgatgtc |
430 |
Q |
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| T |
11746713 |
aaagttttgatgtc |
11746700 |
T |
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