View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8601_low_17 (Length: 406)

Name: NF8601_low_17
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8601_low_17
NF8601_low_17
[»] chr4 (9 HSPs)
chr4 (18-402)||(55635137-55635533)
chr4 (18-354)||(54862030-54862377)
chr4 (18-255)||(55665425-55665658)
chr4 (75-255)||(55659266-55659446)
chr4 (18-300)||(54627020-54627312)
chr4 (102-255)||(3671857-3672010)
chr4 (156-255)||(52985800-52985899)
chr4 (97-208)||(50192010-50192121)
chr4 (358-406)||(55659557-55659605)
[»] chr8 (1 HSPs)
chr8 (17-300)||(9889523-9889813)
[»] chr2 (1 HSPs)
chr2 (87-247)||(13401479-13401639)
[»] chr7 (1 HSPs)
chr7 (115-245)||(46155168-46155298)
[»] chr1 (1 HSPs)
chr1 (118-194)||(37311023-37311099)


Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 55635533 - 55635137
Alignment:
Q  18 ctgtacataaaaaat---ctagtattaatacacaaataaaggtcttcttgcaggttcagtttttaatttaacaaaaataacaattacctgctcaaatagg 114  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  55635533 ctgtacataaaaaataatctagtattaatacacaaataaaggtcttcttgcaggtttagtttttaatttaacaaaaacaacaattacctgctcaaatagg 55635434  T
Q  115 ggttgtggctttcccctacaaaagtttgacaaggtccatgtggcaattctcagcatagaaagccttgcttgctcattcaactgggataacagtggaatcg 214  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  55635433 ggttgtggctttcccctgcaaaagtttgacaaggtccatgtggcaattctcagcatagaaagccttgcttgctcattcaactgggataacagtggaatca 55635334  T
Q  215 gggcaccatgactgagaacaagatcacggcaccaagggg----------aacgtttcccaatgcccatgcagcctacaattttagagttttagtgtatta 304  Q
    |||||||||||||||||||||||||||||||||||||||          |||||||||||||||||| |||||||||||||| |||||||||||||| ||    
T  55635333 gggcaccatgactgagaacaagatcacggcaccaaggggactcaccggcaacgtttcccaatgcccacgcagcctacaatttcagagttttagtgta-ta 55635235  T
Q  305 gcaaaaaagaggacaatcccagttctaatgcaataacattttagtataaaaattaataaatatacctgctcccgaacgtcttcgttgggtgaactaag 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||    
T  55635234 gcaaaaaagaggacaatcccagttctaatgcaataacattttagtataataattaataaatatacctgctcctgaacatcttcgttgggtgaactaag 55635137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 54862030 - 54862377
Alignment:
Q  18 ctgtacataaaaaatctagtattaatacacaaataaaggtcttcttgcaggttcagtttttaatttaacaaaaataacaattacctgctcaaataggggt 117  Q
    |||| ||| |||| ||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||| ||||| ||||||||||||||||| | |||||    
T  54862030 ctgtccatcaaaattctagtattaatacacagataaaggtcgtcttgtaggttcagtttt-aatttaataaaaacaacaattacctgctcaagtgggggt 54862128  T
Q  118 tgtggctttcccctacaaaagtttgacaaggtccatgtggcaattctcagcatagaaagccttgcttgctcattcaactgggataacagtggaatcgggg 217  Q
    |||||||| ||||| ||||||||||||||||||||  ||||| ||||||  ||| |||||  || ||| |||||||||||||||||||| || ||| |||    
T  54862129 tgtggcttgcccctgcaaaagtttgacaaggtccaaatggcatttctcaatatataaagctctgtttggtcattcaactgggataacagcgggatcaggg 54862228  T
Q  218 caccatgactgagaacaagatcacggcaccaagggg----------aacgtttcccaatgcccatgcagcctacaattttagagttttagtgtattagca 307  Q
    ||||||||||||||||||||||||| |||| |||||          || ||||||||||||||| | ||||||||| || || ||||||| || | || |    
T  54862229 caccatgactgagaacaagatcacgacacctaggggaatcaccagcaatgtttcccaatgcccacggagcctacaaattcagtgttttagagt-tcagaa 54862327  T
Q  308 a---aaaagaggacaatcccagttctaatgcaataacattttagtataaa 354  Q
    |   |||| |||||||||||||||||| ||| || |||||||||||||||    
T  54862328 aaagaaaaaaggacaatcccagttctactgctattacattttagtataaa 54862377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 55665425 - 55665658
Alignment:
Q  18 ctgtacataaaaaatctagtattaatacacaaataaaggtcttcttgcaggttcagtttttaatttaacaaaaataacaattacctgctcaaataggggt 117  Q
    |||| ||||||||| |||||||||||||||| | ||| |||||   ||||||||| |||| ||||||||||||| ||||| ||||||||||| | |||||    
T  55665425 ctgtccataaaaaacctagtattaatacacagacaaatgtctt---gcaggttcaatttt-aatttaacaaaaacaacaactacctgctcaattgggggt 55665520  T
Q  118 tgtggctttcccctacaaaagtttgacaaggtccatgtggcaattctcagcatagaaagccttgcttgctcattcaactgggataacagtggaatcgggg 217  Q
     ||||||| ||  | |||||| |||||| |||||| ||||||| |||||||||||||||| ||||||||||||||||||||| |||||| || ||| | |    
T  55665521 ggtggcttgcctttgcaaaagcttgacagggtccacgtggcaactctcagcatagaaagctttgcttgctcattcaactgggttaacagcgggatcagcg 55665620  T
Q  218 caccatgactgagaacaagatcacggcaccaaggggaa 255  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  55665621 caccatgactgaaaacaagatcacggcacctaggggaa 55665658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 75 - 255
Target Start/End: Original strand, 55659266 - 55659446
Alignment:
Q  75 ttttaatttaacaaaaataacaattacctgctcaaataggggttgtggctttcccctacaaaagtttgacaaggtccatgtggcaattctcagcatagaa 174  Q
    ||||||||||||||| | ||||| ||||||||||||| ||||| |||| ||||| || ||||||||||||| || | | || ||||||||||||||||||    
T  55659266 ttttaatttaacaaacacaacaactacctgctcaaatgggggtggtggttttcctctgcaaaagtttgacagggccaacgtagcaattctcagcatagaa 55659365  T
Q  175 agccttgcttgctcattcaactgggataacagtggaatcggggcaccatgactgagaacaagatcacggcaccaaggggaa 255  Q
    ||| |||||||||||||||||||||||||||| || |||   |||||||||||||||||||||||||| || | |||||||    
T  55659366 agctttgcttgctcattcaactgggataacagcgggatcaacgcaccatgactgagaacaagatcacgacaactaggggaa 55659446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 54627312 - 54627020
Alignment:
Q  18 ctgtacataaaaaatctagtattaatacacaaataaaggtcttcttgcaggttcagtttttaatttaac-aaaaataacaattacctgctcaaatagggg 116  Q
    |||| ||| |||| ||||||||||||||||| ||||||||| |||   |||||||||||| | |||||| ||||| ||||| ||||||||||| |  |||    
T  54627312 ctgtccatcaaaattctagtattaatacacagataaaggtcatctcagaggttcagtttt-attttaactaaaaacaacaactacctgctcaagtgcggg 54627214  T
Q  117 ttgtggctttcccctacaaaagtttgacaaggtccatgtggcaattctcagcatagaaagccttgcttgctcattcaactgggataacagtggaatcggg 216  Q
    ||||||||| ||||| |||||||||||||  |||||   |||| |||||||| || |||||| | |||||||||||| ||||||||| ||| | ||| ||    
T  54627213 ttgtggcttgcccctgcaaaagtttgacagcgtccaaacggcatttctcagcctataaagcccttcttgctcattcagctgggataaaagtaggatcagg 54627114  T
Q  217 gcaccatgactgagaacaagatcacggcaccaagggg----------aacgtttcccaatgcccatgcagcctacaattttagagttttagtgt 300  Q
    ||||| ||||||||||||||||||||||  | |||||          || ||||||||||||||| |||||||||||||| |||||||| ||||    
T  54627113 gcaccgtgactgagaacaagatcacggcctctaggggaatcaccagcaatgtttcccaatgcccacgcagcctacaatttcagagttttggtgt 54627020  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 102 - 255
Target Start/End: Original strand, 3671857 - 3672010
Alignment:
Q  102 ctgctcaaataggggttgtggctttcccctacaaaagtttgacaaggtccatgtggcaattctcagcatagaaagccttgcttgctcattcaactgggat 201  Q
    ||||||||| ||||||||||| || ||| | ||||||||||||| ||| |  || |||| ||||||||||||||    ||   |||||||||| ||||||    
T  3671857 ctgctcaaacaggggttgtggtttgcccatgcaaaagtttgacagggttcgcgttgcaactctcagcatagaaatatctgtaagctcattcaagtgggat 3671956  T
Q  202 aacagtggaatcggggcaccatgactgagaacaagatcacggcaccaaggggaa 255  Q
    ||||| || |||  |||||||||||||||||||||||||||||| | |||||||    
T  3671957 aacagcgggatcatggcaccatgactgagaacaagatcacggcaactaggggaa 3672010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 255
Target Start/End: Original strand, 52985800 - 52985899
Alignment:
Q  156 ggcaattctcagcatagaaagccttgcttgctcattcaactgggataacagtggaatcggggcaccatgactgagaacaagatcacggcaccaaggggaa 255  Q
    ||||| |||||||||||||||||||| ||| ||||| |||||||||| || ||| |||  |||||||||||||| ||||||||||||||||  |||||||    
T  52985800 ggcaactctcagcatagaaagccttgtttgatcattgaactgggatagcaatgggatcaaggcaccatgactgaaaacaagatcacggcacataggggaa 52985899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 50192010 - 50192121
Alignment:
Q  97 attacctgctcaaataggggttgtggctttcccctacaaaagtttgacaaggtccatgtggcaattctcagcatagaaagccttgcttgctcattcaact 196  Q
    |||||| ||||||||   ||| |||||||||||||||| |||||||| || |||||||||||| |||||||||| ||||  || |  |||||||| ||||    
T  50192010 attaccagctcaaatgcaggtggtggctttcccctacagaagtttgataaagtccatgtggcatttctcagcattgaaattctggtgtgctcattgaact 50192109  T
Q  197 gggataacagtg 208  Q
    |||  |||||||    
T  50192110 gggccaacagtg 50192121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 55659557 - 55659605
Alignment:
Q  358 taataaatatacctgctcccgaacgtcttcgttgggtgaactaagtagc 406  Q
    |||||||||||||||||| ||||| || ||| | |||||||||||||||    
T  55659557 taataaatatacctgctctcgaacatcatcgctaggtgaactaagtagc 55659605  T

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Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 9889813 - 9889523
Alignment:
Q  17 actgtacataaaaaatctagtattaatacacaaataaaggtcttcttgcaggttcagtttttaatttaacaaaaataacaattacctgctcaaatagggg 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||   ||||   ||||||||| |||||||| ||||| |||||||||||| |||||    
T  9889813 actgtccataaaaaatctagtattaatacacaaataaaggtctttttaagggtt---tttttaattcaacaaaaacaacaactacctgctcaaacagggg 9889717  T
Q  117 ttgtggctttcccctacaaaagtttgacaaggtccatgtggcaattctcagcatagaaagccttgcttgctcattcaactgggataacagtggaatcggg 216  Q
    ||| || || ||||||||||||||||||| ||| |  || |||||||||||||||||||    |||| |||||||||| ||||||||||| || |||  |    
T  9889716 ttgcggtttgcccctacaaaagtttgacagggttcgcgttgcaattctcagcatagaaatatctgctagctcattcaagtgggataacagcgggatcatg 9889617  T
Q  217 gcaccatgactgagaacaagatcacggcaccaagggg----------aacgtttcccaatgcccatgcagcctacaattttagagttttagtgt 300  Q
    |||||||||||||||||||||| |||||| | |||||          |||||||||||| ||||| | |||||||||||| |||||||||||||    
T  9889616 gcaccatgactgagaacaagataacggcaactaggggaatcacaggcaacgtttcccaacgcccacgaagcctacaatttcagagttttagtgt 9889523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 87 - 247
Target Start/End: Complemental strand, 13401639 - 13401479
Alignment:
Q  87 aaaaataacaattacctgctcaaataggggttgtggctttcccctacaaaagtttgacaaggtccatgtggcaattctcagcatagaaagccttgcttgc 186  Q
    ||||| ||||| |||||| |||||| | ||||||||||| ||||| |||||||||||||  |||||||||||| |||||||||| |||||| |||| |||    
T  13401639 aaaaacaacaactacctgatcaaatggaggttgtggcttgcccctgcaaaagtttgacagagtccatgtggcatttctcagcattgaaagctttgcctgc 13401540  T
Q  187 tcattcaactgggataacagtggaatcggggcaccatgactgagaacaagatcacggcacc 247  Q
    ||||||||||||| |||||| || ||| |||||||||| || ||||||||||| |||||||    
T  13401539 tcattcaactgggttaacagcgggatcagggcaccatggctaagaacaagatcgcggcacc 13401479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 245
Target Start/End: Original strand, 46155168 - 46155298
Alignment:
Q  115 ggttgtggctttcccctacaaaagtttgacaaggtccatgtggcaattctcagcatagaaagccttgcttgctcattcaactgggataacagtggaatcg 214  Q
    ||||||||||||||||| || |||||||| |  |||||||||||| |||| |||||||||||  | || ||||||||||| || |  ||||| |||| |     
T  46155168 ggttgtggctttcccctgcagaagtttgagagtgtccatgtggcatttctaagcatagaaagtttagcatgctcattcaattgcgccaacagaggaagca 46155267  T
Q  215 gggcaccatgactgagaacaagatcacggca 245  Q
      || ||||||| ||||||||||||||||||    
T  46155268 aagctccatgaccgagaacaagatcacggca 46155298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 37311023 - 37311099
Alignment:
Q  118 tgtggctttcccctacaaaagtttgacaaggtccatgtggcaattctcagcatagaaagccttgcttgctcattcaa 194  Q
    |||||||| ||||| || |||||||| |  ||||| || ||| ||||||||||||||||| | || |||||||||||    
T  37311023 tgtggcttgcccctgcagaagtttgaaagtgtccaggtagcatttctcagcatagaaagcttcgcatgctcattcaa 37311099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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