View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8601_low_18 (Length: 391)

Name: NF8601_low_18
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8601_low_18
NF8601_low_18
[»] chr7 (5 HSPs)
chr7 (248-375)||(12543514-12543643)
chr7 (123-181)||(12543375-12543433)
chr7 (1-50)||(12543253-12543302)
chr7 (123-185)||(7744506-7744568)
chr7 (1-46)||(7744645-7744690)
[»] chr8 (2 HSPs)
chr8 (123-177)||(1080879-1080933)
chr8 (123-181)||(24917449-24917507)
[»] chr5 (2 HSPs)
chr5 (128-181)||(11893735-11893788)
chr5 (128-181)||(28086278-28086331)
[»] chr3 (1 HSPs)
chr3 (123-177)||(53281561-53281616)
[»] chr2 (1 HSPs)
chr2 (128-181)||(562179-562232)
[»] chr6 (3 HSPs)
chr6 (123-169)||(15339447-15339493)
chr6 (128-181)||(33846143-33846196)
chr6 (128-181)||(33847182-33847235)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 248 - 375
Target Start/End: Original strand, 12543514 - 12543643
Alignment:
Q  248 agcgcctctatccaccagtagttatatattcatcagtttgcttaaggctccgccatatc--ttgttcggtacttttctccagctgtcatttcaaatttta 345  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  12543514 agcgcctctatccaccggtagttatatattcatcagtttgcttaaggctccgccatatcccttgttcggtacttttctccagctgtcatttcaaatttta 12543613  T
Q  346 aggcacttaattccctttgttacaatgtgt 375  Q
    ||||||||||||||||||||||||||||||    
T  12543614 aggcacttaattccctttgttacaatgtgt 12543643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 12543375 - 12543433
Alignment:
Q  123 ctgtttgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12543375 ctgtttgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 12543433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 12543253 - 12543302
Alignment:
Q  1 aggggtggggcgaagggcaagaatgtagcggcagccagtggtggtggcgg 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12543253 aggggtggggcgaagggcaagaatgtagcggcagccagtggtggtggcgg 12543302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 7744568 - 7744506
Alignment:
Q  123 ctgtttgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatggatc 185  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  7744568 ctgtgtgaaatttccaaaatacccatgccacataaggggtgtatattggggtgtacatagatc 7744506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7744690 - 7744645
Alignment:
Q  1 aggggtggggcgaagggcaagaatgtagcggcagccagtggtggtg 46  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  7744690 aggggtggggcgaagggcaagaatgcagcggcagccagtggtggtg 7744645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 1080933 - 1080879
Alignment:
Q  123 ctgtttgaaatttccaaaatacccatgccacataagggttgtatatgggggtgta 177  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1080933 ctgtgtgaaatttccaaaatacccatgccacataaggggtgtatatgggggtgta 1080879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 24917507 - 24917449
Alignment:
Q  123 ctgtttgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 181  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  24917507 ctgtgtgaaatttccaaaatacccatgccacataaggggtgtatatggggatgtacatg 24917449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 11893788 - 11893735
Alignment:
Q  128 tgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 181  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  11893788 tgaaatttccaaaatacccatgccacataaggggtgtatatgagggtgtacatg 11893735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 28086278 - 28086331
Alignment:
Q  128 tgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 181  Q
    ||||||||| ||||||||||||||||||||||| ||||||||  ||||||||||    
T  28086278 tgaaatttctaaaatacccatgccacataaggggtgtatatgaaggtgtacatg 28086331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 53281561 - 53281616
Alignment:
Q  123 ctgtttgaaatttccaaaatacccatgccacataa-gggttgtatatgggggtgta 177  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  53281561 ctgtgtgaaatttccaaaatacccatgccacataagggggtgtatatgggggtgta 53281616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 562232 - 562179
Alignment:
Q  128 tgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 181  Q
    ||||||||| ||||||||||||||||||||||| ||||||||  ||||||||||    
T  562232 tgaaatttctaaaatacccatgccacataaggggtgtatatgaaggtgtacatg 562179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 15339493 - 15339447
Alignment:
Q  123 ctgtttgaaatttccaaaatacccatgccacataagggttgtatatg 169  Q
    |||| |||||||||||||||||||||||||||||| || ||||||||    
T  15339493 ctgtgtgaaatttccaaaatacccatgccacataacgggtgtatatg 15339447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 33846196 - 33846143
Alignment:
Q  128 tgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 181  Q
    ||||||||| ||||||||||||||||||||| | ||||||||  ||||||||||    
T  33846196 tgaaatttctaaaatacccatgccacataagaggtgtatatgaaggtgtacatg 33846143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 33847182 - 33847235
Alignment:
Q  128 tgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatg 181  Q
    ||||||||| ||||||||||||||||||||| | ||||||||  ||||||||||    
T  33847182 tgaaatttctaaaatacccatgccacataagaggtgtatatgaaggtgtacatg 33847235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University