View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8601_low_19 (Length: 387)

Name: NF8601_low_19
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8601_low_19
NF8601_low_19
[»] chr1 (11 HSPs)
chr1 (41-368)||(4955889-4956216)
chr1 (1-50)||(22077609-22077658)
chr1 (1-50)||(66586-66635)
chr1 (1-50)||(39066314-39066363)
chr1 (3-50)||(5320081-5320128)
chr1 (1-52)||(22077942-22077993)
chr1 (1-50)||(24600428-24600477)
chr1 (1-50)||(34364502-34364551)
chr1 (1-50)||(41184539-41184588)
chr1 (1-50)||(44685451-44685500)
chr1 (6-50)||(1188707-1188751)
[»] chr4 (5 HSPs)
chr4 (1-50)||(3244563-3244612)
chr4 (1-50)||(54741290-54741339)
chr4 (1-50)||(2740695-2740744)
chr4 (1-50)||(10245915-10245964)
chr4 (1-50)||(25483331-25483380)
[»] chr7 (5 HSPs)
chr7 (3-50)||(28301659-28301706)
chr7 (1-50)||(16569191-16569240)
chr7 (1-50)||(16596422-16596471)
chr7 (1-50)||(43241490-43241539)
chr7 (2-50)||(36967344-36967392)
[»] scaffold0078 (1 HSPs)
scaffold0078 (1-50)||(5352-5401)
[»] chr8 (3 HSPs)
chr8 (1-50)||(41972153-41972202)
chr8 (1-55)||(9608735-9608789)
chr8 (1-51)||(45122171-45122221)
[»] chr5 (5 HSPs)
chr5 (1-50)||(41632777-41632826)
chr5 (6-50)||(31509618-31509662)
chr5 (3-50)||(36568683-36568730)
chr5 (1-50)||(1028631-1028680)
chr5 (1-50)||(26074260-26074309)
[»] chr3 (6 HSPs)
chr3 (6-50)||(47965034-47965078)
chr3 (3-50)||(9240144-9240191)
chr3 (1-50)||(33175778-33175827)
chr3 (1-50)||(49336801-49336850)
chr3 (6-50)||(12747871-12747915)
chr3 (9-53)||(39336351-39336395)
[»] chr6 (2 HSPs)
chr6 (3-50)||(10074107-10074154)
chr6 (1-50)||(16107673-16107722)
[»] chr2 (4 HSPs)
chr2 (1-50)||(962593-962642)
chr2 (1-50)||(28531428-28531477)
chr2 (6-50)||(30313173-30313217)
chr2 (6-50)||(33561570-33561614)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 41 - 368
Target Start/End: Complemental strand, 4956216 - 4955889
Alignment:
Q  41 ttgcacacaatagaactacatgctacaacctatatttcctttctctacttttttagaactgcatgcaagttctaagaacttaccagaaatctttgttgcn 140  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4956216 ttgcacacaatagaactacctgctgccacctatatttcctttctctacttttttagaactgcatgcaagttctaagaacttaccagaaatctttgttgca 4956117  T
Q  141 nnnnnngtttaataaaagcaagagttgtcatcttttgacctaaaaactagattagacaaattaataatacttaactttaatttttgaaaaagaataatca 240  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4956116 aaaaaagtttaataaaagcaagagttgtcatcttttgacctaaaaactagattagacaaattaataatacttaactttaatttttgaaaaagaataatca 4956017  T
Q  241 taaacggatatagatatgaatttgatatcaatccattgtgcatgtattttatttgtggtgtaagcttccttttcttttcaacaatggataagacaaggct 340  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4956016 taaacagatatagatatggatttgatatcaatccattgtgcatgtattttatttgtggtgtaagcttccttttcttttcaacaatggataagacaaggct 4955917  T
Q  341 atttactatcttttactgtcggttagga 368  Q
    ||||||||||||||||||||||||||||    
T  4955916 atttactatcttttactgtcggttagga 4955889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 22077609 - 22077658
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  22077609 cctttacttttctatccgatgtgagacatataactcacacttgcacacaa 22077658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 66586 - 66635
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||||||||||||||| || | |||||||||||| |||||||||||    
T  66586 cctttacttttctatccgatatggaacatataactcacacttgcacacaa 66635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39066314 - 39066363
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||||||||||||||||||||| |  ||||||||||| |||||||||||    
T  39066314 cctttacttttctatccgatgtggaatatataactcacacttgcacacaa 39066363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 5320081 - 5320128
Alignment:
Q  3 tttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||||||||||||||||||| | |||||||||||| |||||| ||||    
T  5320081 tttacttttctatccgatgtggaacatataactcacacttgcatacaa 5320128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22077942 - 22077993
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaata 52  Q
    |||||| ||||||||||||| | || |||||||||||| |||||||||||||    
T  22077942 cctttatttttctatccgatttaaaacatataactcacacttgcacacaata 22077993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24600428 - 24600477
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||||||||||||||| ||   |||||||||||| |||||||||||    
T  24600428 cctttacttttctatccgatatgggacatataactcacacttgcacacaa 24600477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34364551 - 34364502
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||| || ||||||||||||  |||||||||||| |||||||||||    
T  34364551 cctttactattttatccgatgtgagacatataactcacacttgcacacaa 34364502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 41184539 - 41184588
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||| || ||||||||||||  |||||||||||| |||||||||||    
T  41184539 cctttactattttatccgatgtgagacatataactcacacttgcacacaa 41184588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 44685500 - 44685451
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||||||||||||||| ||   |||||||||||| |||||||||||    
T  44685500 cctttacttttctatccgatatgggacatataactcacacttgcacacaa 44685451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 1188707 - 1188751
Alignment:
Q  6 acttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||||||||||||| || | |||||||||||| |||||||||||    
T  1188707 acttttctatccgatatggaacatataactcacacttgcacacaa 1188751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3244563 - 3244612
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  3244563 cctttacttttctatccgatgtgagacatataactcacacttgcacacaa 3244612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 54741290 - 54741339
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||||||||||||||||||||||  ||||||| |||| |||||||||||    
T  54741290 cctttacttttctatccgatgtgagacatataattcacacttgcacacaa 54741339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2740744 - 2740695
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||| ||||||||||||||   |||||||||||| |||||||||||    
T  2740744 cctttactgttctatccgatgtgggacatataactcacacttgcacacaa 2740695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10245964 - 10245915
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||| || |||||||||||  ||||||||||||| |||||||||||    
T  10245964 cctttactcttttatccgatgtggggcatataactcacacttgcacacaa 10245915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 25483380 - 25483331
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||| || ||||||||||||  |||||||||||| |||||||||||    
T  25483380 cctttactattttatccgatgtgagacatataactcacacttgcacacaa 25483331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 28301659 - 28301706
Alignment:
Q  3 tttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||||    
T  28301659 tttacttttctatccgatgtgagacatataactcacacttgcacacaa 28301706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 16569240 - 16569191
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||| |||||||||||||||  |||||||||||| |||||| ||||    
T  16569240 cctttactgttctatccgatgtgagacatataactcacacttgcatacaa 16569191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16596422 - 16596471
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||| |||||||||||||||  |||||||||||| |||||| ||||    
T  16596422 cctttactgttctatccgatgtgagacatataactcacacttgcatacaa 16596471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 43241539 - 43241490
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||| |||| ||||||||||| | |||||||||||| |||||||||||    
T  43241539 cctttatttttttatccgatgtggaacatataactcacacttgcacacaa 43241490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 36967344 - 36967392
Alignment:
Q  2 ctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||||| ||||||||||||  |||||||||||| |||| ||||||    
T  36967344 ctttacttttttatccgatgtgagacatataactcacacttgtacacaa 36967392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5401 - 5352
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||| |||||||||||||| | |||||||||||| |||||||||||    
T  5401 cctttactgttctatccgatgtggaacatataactcacacttgcacacaa 5352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 41972202 - 41972153
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||||||||||||||||||   |||||||||||| |||||||||||    
T  41972202 cctttacttttctatccgatgtgggacatataactcacacttgcacacaa 41972153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9608789 - 9608735
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaatagaa 55  Q
    |||||||||||||||||||| ||   |||||||||||| ||||||||||| ||||    
T  9608789 cctttacttttctatccgatatgggacatataactcacacttgcacacaacagaa 9608735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 45122171 - 45122221
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaat 51  Q
    |||||||| || ||||||||||||  |||||||||||| ||||||||||||    
T  45122171 cctttactattttatccgatgtgagacatataactcacacttgcacacaat 45122221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 41632826 - 41632777
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||||||||||||||||||||||  ||||||||| || |||||||||||    
T  41632826 cctttacttttctatccgatgtgagacatataacttacacttgcacacaa 41632777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 31509662 - 31509618
Alignment:
Q  6 acttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||||||||||||||  |||||||||||| |||||||||||    
T  31509662 acttttctatccgatgtgagacatataactcacacttgcacacaa 31509618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 36568683 - 36568730
Alignment:
Q  3 tttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||||||||||||||||   |||||||||||| |||||||||||    
T  36568683 tttacttttctatccgatgtgggacatataactcacacttgcacacaa 36568730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1028631 - 1028680
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||||||||||||||||||   |||||||||||| |||| ||||||    
T  1028631 cctttacttttctatccgatgtgggacatataactcacacttgtacacaa 1028680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26074260 - 26074309
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||||||||| |||||||||||   |||||||||||| |||||||||||    
T  26074260 cctttacttttttatccgatgtgtgacatataactcacacttgcacacaa 26074309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 47965034 - 47965078
Alignment:
Q  6 acttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||||||||||||||| || |||||||||||| |||||||||||    
T  47965034 acttttctatccgatgtaaaacatataactcacacttgcacacaa 47965078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 9240191 - 9240144
Alignment:
Q  3 tttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||||| ||||||||||||| | |||||||||||| |||||||||||    
T  9240191 tttacttctctatccgatgtggaacatataactcacacttgcacacaa 9240144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 33175778 - 33175827
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||||||||||| |||||||  |||||||||||| |||| ||||||    
T  33175778 cctttacttttctatctgatgtgagacatataactcacacttgtacacaa 33175827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 49336801 - 49336850
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||||||||||||||||||||||  ||| |||||||| |||| ||||||    
T  49336801 cctttacttttctatccgatgtgagacatgtaactcacacttgtacacaa 49336850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 12747871 - 12747915
Alignment:
Q  6 acttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||||||||||||||||   |||||||||||| |||||||||||    
T  12747871 acttttctatccgatgtgggacatataactcacacttgcacacaa 12747915  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 39336351 - 39336395
Alignment:
Q  9 tttctatccgatgtgaagcatataactcacccttgcacacaatag 53  Q
    |||||||||||||||   |||||||||||| ||||||||||||||    
T  39336351 tttctatccgatgtgggacatataactcacacttgcacacaatag 39336395  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 10074107 - 10074154
Alignment:
Q  3 tttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||||||||||||||||    |||||||||||||||||||||||    
T  10074107 tttacttttctatccgatgtgggatatataactcacccttgcacacaa 10074154  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 16107722 - 16107673
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||||||||| ||||||||||||  |||||||||||| |||| ||||||    
T  16107722 cctttacttttttatccgatgtgacacatataactcacacttgtacacaa 16107673  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 962642 - 962593
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||||||||||||||||||   |||||||||||| |||||| ||||    
T  962642 cctttacttttctatccgatgtgggacatataactcacacttgcatacaa 962593  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28531428 - 28531477
Alignment:
Q  1 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||| |||||||||||||||||   |||||||||||| |||||||||||    
T  28531428 cctttgcttttctatccgatgtgggacatataactcacacttgcacacaa 28531477  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 30313217 - 30313173
Alignment:
Q  6 acttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    |||||||||||||||||||  |||||||| ||| |||||||||||    
T  30313217 acttttctatccgatgtgagacatataacacacgcttgcacacaa 30313173  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 33561570 - 33561614
Alignment:
Q  6 acttttctatccgatgtgaagcatataactcacccttgcacacaa 50  Q
    ||||||||||| |||||| | |||||||||||| |||||||||||    
T  33561570 acttttctatctgatgtggaacatataactcacacttgcacacaa 33561614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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