View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_low_20 (Length: 382)
Name: NF8601_low_20
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 347
Target Start/End: Original strand, 33492590 - 33492916
Alignment:
| Q |
6 |
atggacatcataacaacaaaaagcccaatcagaccgatgaaaagagagtgagaaggaaagcccaaatggatggataatttcaatagttgaaaacaggtat |
105 |
Q |
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| T |
33492590 |
atggacataataacaacaaaaggcccaatcagaccgatgaaaagagagtgagaaggaaagcccaaatggatggataatttcaatagttgaaaacaggtgt |
33492689 |
T |
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| Q |
106 |
tgacagctcttaggccttatctattacagctcattgtactgttgccagtcctagtttataaggatattttcttttcctttgaag-caaaccccaaacagt |
204 |
Q |
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| T |
33492690 |
tgacagctcttaggccttatctattacagctcattgtactgttgccaatcctagtttataaagatattttcttttcccttgaagccaaaccccaaacagt |
33492789 |
T |
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| Q |
205 |
ctcaatccctttccacattcaagtaccacattgtcgtcatccgtatcatggctggacccatttgttcctttgtcgaggaggatatggttaatttgttcag |
304 |
Q |
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| T |
33492790 |
ctcaatcccttt-------------ccacattgtcatcatccgtatcatggctggacccatttgttcctttgcc---gaggatatggttaatttgttcag |
33492873 |
T |
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| Q |
305 |
ccccgatgttgagatcgccctgaagataagctagcaattcttc |
347 |
Q |
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| T |
33492874 |
ccccgatgttgagatcgcactgaagataagctagcaattcttc |
33492916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 98 - 361
Target Start/End: Complemental strand, 33493594 - 33493328
Alignment:
| Q |
98 |
acaggtattgacagctcttaggccttatctattacagctcattgtactgttgccagtcctagtttataaggatattttcttttcctttgaagcaaacccc |
197 |
Q |
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| T |
33493594 |
acaggtgttgacatctcttaggccttatctattactgcttgttgtactgtttctagtcctagtttatagggatattttcttctcccttcagccaaacccc |
33493495 |
T |
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| Q |
198 |
aaacagtctcaatccctttccacattcaagtaccacattg------tcgtcatccgtatcatggctggacccatttgttcctttgtcgaggaggatatgg |
291 |
Q |
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| T |
33493494 |
aaacagtctcaatccctttccacattcacgtaccacattgtcatcatcatcatccgtatcatggctggacccatttgttcttttgcc---gaggatatgg |
33493398 |
T |
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| Q |
292 |
ttaatttgttcagccccgatgttgagatcgccctgaagataagctagcaattcttcgcacttcttcttcg |
361 |
Q |
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| T |
33493397 |
ttaatttgttcagccccgatgttgagattgccctaaagataaggtagcaattcttcgcacttcttcttcg |
33493328 |
T |
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