View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_low_25 (Length: 328)
Name: NF8601_low_25
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 27430334 - 27430654
Alignment:
| Q |
1 |
ttgcaagattctacaagtatgatgggcatagtaggttgttttgtaaagaggtggatcctcttgaatttgttgcacttgttttgttgctttgcaaccttga |
100 |
Q |
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| T |
27430334 |
ttgcaagattctacaagtatgatgggcatagtaggttgttttgtaaagaggtggatcctcttgaatttgttgcacttgttttgttgctttgcaaccttga |
27430433 |
T |
|
| Q |
101 |
tcatgtttgtgagtgcacctgtaatagttcctgcaaagc--atataaataaatatatattcccatagtgaaaattaattaatttgaaaatcaataattaa |
198 |
Q |
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| T |
27430434 |
tcatgtttgtgagtgcacctgtaatagttcctgcaaagcatatataaataaatatatattcccatagtgaaaattaattaatttgaaaatcaataattaa |
27430533 |
T |
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| Q |
199 |
catgataatgtgttcaaatagtgaagttagtgcttaattaaactcgtaaaannnnnnnnnnnnnnnccttggaaaatcggtgtgcaagatcnnnnnnngc |
298 |
Q |
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| T |
27430534 |
catgataatttgttcaaatagtgaagtttgtgcttaattaaactcgtaaaa------atatatataccttggaaaatcggtgtgcaagatctttttttgc |
27430627 |
T |
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| Q |
299 |
ccatactttctccattgatgtccatct |
325 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
27430628 |
ccatactttctccattgatgaccatct |
27430654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 27447581 - 27447717
Alignment:
| Q |
1 |
ttgcaagattctacaagtatgatgggcatagtaggttgttttgtaaagaggtggatcctcttgaatttgttgcacttgttttgttgctttgcaaccttga |
100 |
Q |
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||||||||||||||||||||||||| | | |||||||| ||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |
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| T |
27447581 |
ttgcaagattctacaagtatgatggcctgaataggttgtcctgtgaagaggtggatcctcttgaattctttggacttgttttattgctttgcaaccttga |
27447680 |
T |
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| Q |
101 |
tcatgtttgtgagtgcacctgtaatagttcctgcaaa |
137 |
Q |
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|||| |||||||||||| ||||||||||||||||||| |
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| T |
27447681 |
tcatttttgtgagtgcatctgtaatagttcctgcaaa |
27447717 |
T |
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