View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_low_26 (Length: 325)
Name: NF8601_low_26
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 10566733 - 10567053
Alignment:
| Q |
1 |
tagctttgattcaatagaaagttaaaagaagaatcagcattgccttcaaggaactgtctcttgtaagcttcgtcatgaacgtctacagaatgtctattat |
100 |
Q |
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| T |
10566733 |
tagctttgattcaatagaaagttaaaagaagaatcagcattgccttcaaggaactgtctcttgtaagcttcgtcatgaacatctacagaatgtctattat |
10566832 |
T |
|
| Q |
101 |
ttgaatccttatccatagcatcagtggacatcactacaaatttactttggtccttttgccaagaggatgttactgagggtccagaacaactatataactc |
200 |
Q |
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| T |
10566833 |
ttgaatccttatccatagcatcagtggacatcactacaaatttactttggtccttttgccaagaggatgttactgagggtccagaacaactatataactc |
10566932 |
T |
|
| Q |
201 |
agagatagcactatattgactttcaaactcaccacggtctggaatagatctaatcgtcttcatgaactctaaataatcagtccccatacatggaacctcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10566933 |
agagatagcactatattgactttcaaactcaccacggtctggaatagatctaatcgtcttcatgaactctaaataatcagtccccatacatggaacctcc |
10567032 |
T |
|
| Q |
301 |
gagttgatgtccatctcattg |
321 |
Q |
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|||||| | ||| |||||||| |
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| T |
10567033 |
gagttgttttccttctcattg |
10567053 |
T |
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