View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_low_27 (Length: 318)
Name: NF8601_low_27
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_27 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 337228 - 336929
Alignment:
| Q |
1 |
caaatgtagaaatgaaatactagtgtccatacatgcagatccagttaacatatattattagagtagatcagaattcagaagggataccttatcttttaca |
100 |
Q |
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| T |
337228 |
caaatgtagaaatgaaatactagtgtccatacatgcagatccagttaacatatattattagagtagatcagaattcagaagggataccttatcttttaca |
337129 |
T |
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| Q |
101 |
ttcccgaggacaattctataaggagcaattccaggaagatgagggagttttggctccaaaagcttctgaaaactggatcttcctatttgggattctgcaa |
200 |
Q |
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| T |
337128 |
ttcccaaggacaattctataaggagcaattccaggaagatgagggagttttggctccaaaagcttctgaaaactggatcttcctatttgggattctgcaa |
337029 |
T |
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| Q |
201 |
acaatttcctttgagcaagaagttgttgattagagttggaagaaggagatcgtggaatgctcgctgcacttgttggggatgcatgactattggaacttcc |
300 |
Q |
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| T |
337028 |
acaatttcctttgagcaagaagttgttgattagagttggaagaaggagatcgtggaatgctcgctgcacttgttggagatgcatgactattggaacttcc |
336929 |
T |
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Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 42172600 - 42172507
Alignment:
| Q |
84 |
ataccttatcttttacattcccgaggacaattctataaggagcaattccaggaagatgagggagttttggctccaaaagcttctgaaaactgga |
177 |
Q |
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|||||||||| |||||||| || ||||||| |||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||| |
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| T |
42172600 |
ataccttatcctttacatttcccaggacaactctataaggagcaattccaggaagttgagggagctgtggctccaaaagtttctgaaaactgga |
42172507 |
T |
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