View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_low_28 (Length: 313)
Name: NF8601_low_28
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 53 - 301
Target Start/End: Original strand, 15899738 - 15899986
Alignment:
| Q |
53 |
aagatgctaacgaagcatgtaaacttttgtttnnnnnnnttgatgataatattgaagaattgaagaatatgttcactgaggatgcaattgaaggctacaa |
152 |
Q |
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||||||||||||||||||||| |||||| || |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15899738 |
aagatgctaacgaagcatgtatgcttttgcttaaaaagattgaagataatattgaagatttgaagaatatgttcactgaggatgcaattgaaggctacaa |
15899837 |
T |
|
| Q |
153 |
taataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaag |
252 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15899838 |
tgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaag |
15899937 |
T |
|
| Q |
253 |
tttgatcaactgatgcacatatggagagatactttattgttggagaatc |
301 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15899938 |
tttgaccaactgatgcacatatggagagatacttttttgttggagaatc |
15899986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 53 - 301
Target Start/End: Complemental strand, 15874331 - 15874083
Alignment:
| Q |
53 |
aagatgctaacgaagcatgtaaacttttgtttnnnnnnnttgatgataatattgaagaattgaagaatatgttcactgaggatgcaattgaaggctacaa |
152 |
Q |
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|||||| ||||||||||||||| |||||| || |||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
15874331 |
aagatgataacgaagcatgtaagcttttgcttaaaaagattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctacaa |
15874232 |
T |
|
| Q |
153 |
taataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaag |
252 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
15874231 |
tgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatgggaaatgttgatgaccaatgcccgaatgccctaaaccttaag |
15874132 |
T |
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| Q |
253 |
tttgatcaactgatgcacatatggagagatactttattgttggagaatc |
301 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15874131 |
tttgaccaactgatgcacatatggagagatactttattgttggagaatc |
15874083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 53 - 285
Target Start/End: Original strand, 15920766 - 15920998
Alignment:
| Q |
53 |
aagatgctaacgaagcatgtaaacttttgtttnnnnnnnttgatgataatattgaagaattgaagaatatgttcactgaggatgcaattgaaggctacaa |
152 |
Q |
| |
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|||||| |||||||||||||| |||||| || |||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15920766 |
aagatgttaacgaagcatgtatgcttttgcttaaaaagattgaagataatattgaatatttgaagaatatgttcactgaggatgcaattgaaggctacaa |
15920865 |
T |
|
| Q |
153 |
taataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaag |
252 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15920866 |
tgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaag |
15920965 |
T |
|
| Q |
253 |
tttgatcaactgatgcacatatggagagatact |
285 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
15920966 |
tttgaccaactgatgcacatatggagagatact |
15920998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 52 - 282
Target Start/End: Complemental strand, 14060747 - 14060517
Alignment:
| Q |
52 |
caagatgctaacgaagcatgtaaacttttgtttnnnnnnnttgatgataatattgaagaattgaagaatatgttcactgaggatgcaattgaaggctaca |
151 |
Q |
| |
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||||||| |||| ||||||| ||||||||| || |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| | || |
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| T |
14060747 |
caagatggtaaccaagcatgcaaacttttgcttaacaagattgaagataatattgaagaattgaagaacatgttcactgaagatgcaattgaaggattca |
14060648 |
T |
|
| Q |
152 |
ataataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaa |
251 |
Q |
| |
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|| | ||||||||||||||||||||||| |||||||||||||| |||||||| || |||| |||||| |||||||||| || || | ||||| ||||| |
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| T |
14060647 |
atgacaatgatcttgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcgatgaccaatatcccgaagggctaaatcttaa |
14060548 |
T |
|
| Q |
252 |
gtttgatcaactgatgcacatatggagagat |
282 |
Q |
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|||||| ||| ||||| | |||||||||||| |
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| T |
14060547 |
gtttgaccaattgatgtatatatggagagat |
14060517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 92 - 282
Target Start/End: Complemental strand, 14049336 - 14049146
Alignment:
| Q |
92 |
ttgatgataatattgaagaattgaagaatatgttcactgaggatgcaattgaaggctacaataataatgatcttgcttggatattgtttgtggatggatg |
191 |
Q |
| |
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|||| |||||||||| |||||||||||| |||||||| || |||||||||||||| | |||| | || |||||||||||||||||||| ||||||||||| |
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| T |
14049336 |
ttgaagataatattgtagaattgaagaacatgttcacggaagatgcaattgaaggattcaatgacaacgatcttgcttggatattgttcgtggatggatg |
14049237 |
T |
|
| Q |
192 |
ttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaagtttgatcaactgatgcacatatggagagat |
282 |
Q |
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||| ||||| || |||||||||||||| |||||||||| || || | ||||| ||||||||||||||| ||||| |||||||||||||| |
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| T |
14049236 |
ttccttgctgcattttatggaaaatgtcgatgaccaatatcctgaagggctaaatcttaagtttgatcaattgatgtacatatggagagat |
14049146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 21785704 - 21785738
Alignment:
| Q |
169 |
tggatattgtttgtggatggatgttctttgctaca |
203 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
21785704 |
tggatgttgtttgtggatggatgttctttgctaca |
21785738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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