View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8601_low_32 (Length: 269)

Name: NF8601_low_32
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8601_low_32
NF8601_low_32
[»] chr5 (7 HSPs)
chr5 (13-139)||(10290210-10290336)
chr5 (146-249)||(10290052-10290155)
chr5 (13-80)||(10298669-10298736)
chr5 (23-139)||(9747055-9747171)
chr5 (158-252)||(9747370-9747461)
chr5 (81-139)||(10298467-10298525)
chr5 (149-252)||(10298170-10298270)
[»] chr8 (1 HSPs)
chr8 (158-252)||(37743885-37743978)
[»] chr2 (2 HSPs)
chr2 (158-252)||(34694426-34694519)
chr2 (158-252)||(34716838-34716931)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 10290336 - 10290210
Alignment:
Q  13 gacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgctt 112  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10290336 gacatcaaaatgctccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgctt 10290237  T
Q  113 ctgcataagaattcgttcatatttatt 139  Q
    |||||||||||||||||||||||||||    
T  10290236 ctgcataagaattcgttcatatttatt 10290210  T

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Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 146 - 249
Target Start/End: Complemental strand, 10290155 - 10290052
Alignment:
Q  146 tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10290155 tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 10290056  T
Q  246 acac 249  Q
    ||||    
T  10290055 acac 10290052  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 10298736 - 10298669
Alignment:
Q  13 gacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10298736 gacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc 10298669  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 9747055 - 9747171
Alignment:
Q  23 tggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataaga 122  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||   ||  ||||||| ||||    
T  9747055 tggtccaacagtccttgtgaacgacggtggtgagagacatgtaagttcatcatactccctccattactcattccttttcaaccctcatttctgcagaaga 9747154  T
Q  123 attcgttcatatttatt 139  Q
    ||||||||||| |||||    
T  9747155 attcgttcatacttatt 9747171  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 252
Target Start/End: Original strand, 9747370 - 9747461
Alignment:
Q  158 ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactacactga 252  Q
    |||||| |||||| |||||||||||||||| |||||   |||||||||   |||||||||||||||||| |||||||||||||||||||||||||    
T  9747370 ctgttgcccatgacgacctttatatttcattcagag---ttgtataaaaaatcatttgattttctgctatatgctctttaggagaactacactga 9747461  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 10298525 - 10298467
Alignment:
Q  81 ctccaatcctcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatt 139  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||    
T  10298525 ctccaatcctcattcctttttaagtgtcgcttctgcagaagaattctttcatatttatt 10298467  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 10298270 - 10298170
Alignment:
Q  149 tatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactaca 248  Q
    ||||||| ||||||||| |||||||||||| ||||||  ||| |   ||||||||||   |||||||||||||||||| ||||||||| |||||||||||    
T  10298270 tatttttacctgttgactatgatgacctttttatttcgaacaaa---gttgtataaaaaatcatttgattttctgctatatgctcttttggagaactaca 10298174  T
Q  249 ctga 252  Q
    ||||    
T  10298173 ctga 10298170  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 252
Target Start/End: Original strand, 37743885 - 37743978
Alignment:
Q  158 ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactacactga 252  Q
    |||||||||||||||||||| ||||||||| ||||| |||   | |||   |||||||||||||||||  |||||||||||||||||||||||||    
T  37743885 ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaactacactga 37743978  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 252
Target Start/End: Complemental strand, 34694519 - 34694426
Alignment:
Q  158 ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactacactga 252  Q
    |||||||||||||||||||| ||||||||| ||||| |||   | |||   |||||||||||||||||  |||||||||||||||||||||||||    
T  34694519 ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaactacactga 34694426  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 252
Target Start/End: Complemental strand, 34716931 - 34716838
Alignment:
Q  158 ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactacactga 252  Q
    |||||||||||||||||||| ||||||||| ||||| |||   | |||   |||||||||||||||||  |||||||||||||||||||||||||    
T  34716931 ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaactacactga 34716838  T

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