View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_low_35 (Length: 267)
Name: NF8601_low_35
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_35 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 44 - 267
Target Start/End: Original strand, 31327844 - 31328071
Alignment:
| Q |
44 |
taatttaatgcaatcacaagtgtcgt-----gtcagcgtcggacactgaaacacacattcaatcagaagtgttggtgtaacagagattatgctattaaca |
138 |
Q |
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| T |
31327844 |
taatttaatgcaatcacaagtgtcgtatcgtgtcagcgtcggacagtggaacacacattcaatcagaagtgttggtgtaacagagattatgctattaaca |
31327943 |
T |
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| Q |
139 |
cttagttaaattgtttatccaaaccgagcctattactatgctaaccaaacctctatgacaaaataacaagccaagatgaatacatgaaataatcataaca |
238 |
Q |
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| T |
31327944 |
cttagttaaattgtttatccaaactgagcctattactatgctaa-ctaacctctatgacataataacaagccaagatgaatacatgaaataatcaaaaca |
31328042 |
T |
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| Q |
239 |
aaccaatctaattaacttcattgttcaga |
267 |
Q |
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| T |
31328043 |
aaccaatctaattaacttcattgttcaga |
31328071 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 13484072 - 13484127
Alignment:
| Q |
68 |
gtgtcagcgtcggacactgaaacacacattcaatcagaagtgttggtgtaacagag |
123 |
Q |
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| T |
13484072 |
gtgtcagtgtcggacactggaacatgcattcaatcagaagtgttggtgcaacagag |
13484127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 17125776 - 17125818
Alignment:
| Q |
120 |
agagattatgctattaacacttagttaaattgtttatccaaac |
162 |
Q |
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| T |
17125776 |
agagattatgctattagcacttaataaaattgtttatccaaac |
17125818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 8422986 - 8423030
Alignment:
| Q |
123 |
gattatgctattaacacttagttaaattgtttatccaaaccgagc |
167 |
Q |
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| T |
8422986 |
gattatgctataaacacttaattaagttgtttatccaaactgagc |
8423030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 26915307 - 26915230
Alignment:
| Q |
7 |
gacacgtcaacaccgataaaattttnnnnnnntgacgtaatttaatgcaatcacaagtgtcgtgtcagcgtcggacac |
84 |
Q |
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| T |
26915307 |
gacacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcgtgtcggtgtcggacac |
26915230 |
T |
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