View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_low_38 (Length: 249)
Name: NF8601_low_38
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_38 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 27430027 - 27430267
Alignment:
| Q |
9 |
ggacatcatcatacatgatatcagaaatatggacacctaagtgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
108 |
Q |
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| T |
27430027 |
ggacatcatcatacatgatatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
27430126 |
T |
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| Q |
109 |
gagtccagagaggtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactgatgatgatgatgttgatggataagaa |
208 |
Q |
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| T |
27430127 |
tagtccagagaggtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactgatgatgatgatgttgatggataagaa |
27430226 |
T |
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| Q |
209 |
gatgagagaaaagggcaatcttgtttggctggtgttgggaa |
249 |
Q |
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| T |
27430227 |
gatgagagaaaagggcaatcttgtttggctggtgttgggaa |
27430267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 27447304 - 27447478
Alignment:
| Q |
9 |
ggacatcatcatacatgatatcagaaatatggacacctaagtgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
108 |
Q |
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| T |
27447304 |
ggacatcatcatacatgatatcagaaatatggacacctaagtgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
27447403 |
T |
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| Q |
109 |
gagtccagagaggtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactga |
183 |
Q |
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| T |
27447404 |
gagtccagagaggtaatcatttgaagaaggaggaggatgaacaacctcttccttgcactcctcctttttcactga |
27447478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 27447476 - 27447514
Alignment:
| Q |
211 |
tgagagaaaagggcaatcttgtttggctggtgttgggaa |
249 |
Q |
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| T |
27447476 |
tgagagaaaaggacagtcttgtttggctggtgttgggaa |
27447514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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