View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8601_low_4 (Length: 720)
Name: NF8601_low_4
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 690; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 1 - 705
Target Start/End: Complemental strand, 36893380 - 36892675
Alignment:
| Q |
1 |
gtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaagga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893380 |
gtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaagga |
36893281 |
T |
|
| Q |
101 |
aacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893280 |
aacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaa |
36893181 |
T |
|
| Q |
201 |
atttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctccaatttaacataaataaaaaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893180 |
atttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctccaatttaacataaataaaaaata |
36893081 |
T |
|
| Q |
301 |
atcacatggatcaacttgtacaaacattttcacttggaagagataaagattatac-attttatgtacctgaaaccattttatatcccacatcatttgcaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893080 |
atcacatggatcaacttgtacaaacattttcacttggaagagataaagattatacaattttatgtacctgaaaccattttatatcccacatcatttgcaa |
36892981 |
T |
|
| Q |
400 |
ggcagaaccagcaatctgccaaggtttatcaccacctaatgcctctgctgccaaatgcaatactgtattctcatcctcatccattgcaagaatcaaatta |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36892980 |
ggcagaaccagcaatctgccaaggtttatcaccacctaatgcctcggctgccaaatgcaatactgtattctcatcctcatccattgcaagaatcaaatta |
36892881 |
T |
|
| Q |
500 |
ttccaaagttctggttttgaatgcttaatcattctcaaggtctcaacaataagaggttgcctgtatttgactgcaacaagcaatacattttcttttcttg |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36892880 |
ttccaaagttctggttttgaatgcttaatcattctcaaggtctcaacaataagaggttgcctgtatttgactgcaacaagcaatacattttcttttcttg |
36892781 |
T |
|
| Q |
600 |
aggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccatttcaactattccattttttgctgcaaccaaaaatggtgtcatcttttt |
699 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36892780 |
aggtagtgttatgaatggcacttggtacttttattagaatttcgttaaccatttcaactattccattttttgctgcaaccaaaaatggtgtcatcttttt |
36892681 |
T |
|
| Q |
700 |
cttgat |
705 |
Q |
| |
|
|||||| |
|
|
| T |
36892680 |
cttgat |
36892675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 360 - 691
Target Start/End: Complemental strand, 36881936 - 36881599
Alignment:
| Q |
360 |
tatgtacctgaaaccattttatatcccacatcatttgcaaggcagaaccagcaatctgccaaggtttatcaccacctaatgcctctgctgccaaatgcaa |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||| |
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|
| T |
36881936 |
tatgtacctgaaaccattttatatcccacatcatttgtaaggcagaaccagcaatctgccaaggtttaccatcacctagtgcctttgctgccaaatgcaa |
36881837 |
T |
|
| Q |
460 |
tactgtattctcatcctcatccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcatt------ctcaaggtctcaacaataaga |
553 |
Q |
| |
|
|| ||||||||| |||| ||||||||||||||| || ||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| |
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|
| T |
36881836 |
tattgtattctcctccttatccattgcaagaattaagttattccaaagttctggttttgagtgcttaatcattctcattctcaatgtctcaacaataacg |
36881737 |
T |
|
| Q |
554 |
ggttgcctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccattt |
653 |
Q |
| |
|
||||| || | || ||||||||| |||||||||||||||| |||||| | |||| ||||||||||||||| ||||| ||||| ||||||||||| || |
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| T |
36881736 |
ggttgtcttgacttcactgcaacatgcaatacattttctttccttgagtttgtgtcatgaatggcacttggaattttgtctagaaattcgttaaccagtt |
36881637 |
T |
|
| Q |
654 |
caactattccattttttgctgcaaccaaaaatggtgtc |
691 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36881636 |
caactattccatttttcgctgcaaccaaaaatggtgtc |
36881599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 36883377 - 36883098
Alignment:
| Q |
1 |
gtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaagga |
100 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||||||||||| || || |||| ||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
36883377 |
gtgaagaaatggcaaaggcgtcaaatgcaggcttgccttctaatactggactgccttcatcggttgtgccgccaggtacttggcttgctgtggcaaagga |
36883278 |
T |
|
| Q |
101 |
aacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaa |
200 |
Q |
| |
|
|||||| ||||||||| ||||||| || ||||||||||| || |||||||||||||| ||| || |||| ||||||| || ||||||| |||||||| |
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|
| T |
36883277 |
aacaccggctacaaggccagatacgacggagcaggattctgacgtgtcttttagccaactgctgctctcttgtataagattttcgtgtgttgtcttgaaa |
36883178 |
T |
|
| Q |
201 |
atttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctccaa |
280 |
Q |
| |
|
||||| |||||||||||||| || ||||| |||| || |||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
36883177 |
atttcacttgatgttttgcccttgttgttgcttctaaagtagaagtgttgtggtacaaggcttttgatatactgctccaa |
36883098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 36903168 - 36902908
Alignment:
| Q |
15 |
aagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaaggaaacaccagctacaa |
114 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||||||| | ||||||| ||||||||||| || |||| ||||| |||||| ||||||| |||| |
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|
| T |
36903168 |
aagacattgaatgcaggattgccttctaatactggtctaccct---cagttgttccgccaggtactgcacttgttgtggtgaaggaagcaccagcgacaa |
36903072 |
T |
|
| Q |
115 |
gggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaaatttctcttgatgt |
214 |
Q |
| |
|
| || | |||||| |||||||| || | ||||| |||||||||||| | ||||||||||||||||||| |||| || |||||| || | | | ||| |
|
|
| T |
36903071 |
gcgcggctacaaccgagcaggaatctgctgtgttttttagccattcattgctgtcttttataagaccttcatgtgattccttgaagatattttcagctgt |
36902972 |
T |
|
| Q |
215 |
tttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctcc |
278 |
Q |
| |
|
|||||| || ||||| || | ||| ||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
36902971 |
tttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgatatactgctcc |
36902908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 360 - 509
Target Start/End: Complemental strand, 36902141 - 36901989
Alignment:
| Q |
360 |
tatgtacctgaaaccattttatatcccacatcatttgcaaggcagaaccagcaat---ctgccaaggtttatcaccacctaatgcctctgctgccaaatg |
456 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || ||||| | |||||| ||| | |||||||||| || || |||||||||||||||||| |
|
|
| T |
36902141 |
tatgtacctgaaaccatttcatatcccacatcatttgtaatgcagacctagcaatattctgtccaggtttatcaacagcttgtgcctctgctgccaaatg |
36902042 |
T |
|
| Q |
457 |
caatactgtattctcatcctcatccattgcaagaatcaaattattccaaagtt |
509 |
Q |
| |
|
||||| |||||||| | |||||| ||||||||| ||| |||||||||||| |
|
|
| T |
36902041 |
caatattgtattctgcttatcatcctttgcaagaaccaagctattccaaagtt |
36901989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 559 - 689
Target Start/End: Complemental strand, 36901846 - 36901716
Alignment:
| Q |
559 |
cctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccatttcaact |
658 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| |||||| |||| || | | |||| ||||| || ||||||||||| || ||||||||| | |
|
|
| T |
36901846 |
cctgtattctactgcaacaagcaatacattttgtttgcttgagttagtactacggagggcagttggtgcttcgattagaatttctttcaccatttcatat |
36901747 |
T |
|
| Q |
659 |
attccattttttgctgcaaccaaaaatggtg |
689 |
Q |
| |
|
|| |||||| | ||||||||||||| ||||| |
|
|
| T |
36901746 |
atgccatttctagctgcaaccaaaattggtg |
36901716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 23278879 - 23278833
Alignment:
| Q |
364 |
tacctgaaaccattttatatcccacatcatttgcaaggcagaaccag |
410 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
23278879 |
tacctgaaaccattttatatgccacatcatttgcaaggcagcaccag |
23278833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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