View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_low_40 (Length: 244)
Name: NF8601_low_40
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 31328293 - 31328517
Alignment:
| Q |
1 |
ccataactcttacctgaattagatttttgcataggatacaaatttatgttagaccatgatgatgattttgttgttgctgatgatgtttgcttgtttgaac |
100 |
Q |
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| T |
31328293 |
ccataactcttacctgaattagatttttgcataggatacaaatttatgttagaccatgatgatgattttgttgttgctgatgatgtttgcttgtttgaac |
31328392 |
T |
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| Q |
101 |
tcannnnnnncgccgaaccagttgagttacttctatacaaaggaggtaaagaaaaactcaaattcttctttgtatcacaattgagacttttgcttctact |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31328393 |
tcatttttttcgccgaaccagttgagttacttctatacaaaggaggtaaagaaaaactcaaattcttctttgtatcacaattgagacttttgcttctact |
31328492 |
T |
|
| Q |
201 |
aaatccccaaaaagacttggaatga |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
31328493 |
aaatccccaaaaagacttggaatga |
31328517 |
T |
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